PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 917334
Common NameARALYDRAFT_917334
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 287aa    MW: 32401.3 Da    PI: 8.7446
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
917334genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.91.6e-26112161251
             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEE CS
    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveit 51 
             dDgy+WrKYGqK++k+s++prsYY+Ct + C++kk+vers ++p+v++i 
  917334 112 DDGYKWRKYGQKSIKNSPNPRSYYKCTNPICNAKKQVERSIDEPNVTHIS 161
             8*********************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-23104161IPR003657WRKY domain
PROSITE profilePS5081121.769106157IPR003657WRKY domain
SuperFamilySSF1182902.48E-21109161IPR003657WRKY domain
SMARTSM007742.1E-25111169IPR003657WRKY domain
PfamPF031065.0E-20112160IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MAEEGYQWTR RCGNDAVKDI FVNEPPLFFL PQEQHHRLMP NEDSITNKFV TSTLYSGPRI  60
QDIANALALV EPLSHPVPEI SKSTVPRLER STLNKVDKYT LKVKNNSNGM CDDGYKWRKY  120
GQKSIKNSPN PRSYYKCTNP ICNAKKQVER SIDEPNVTHI SSPTKTHQWP NKKTKIHKYY  180
AQEMNKGSQT QEESKEAQLG EPANQNQPVH KAQENTPVNL EDELFFPVDQ CRRQQGLLED  240
VVAPAMKNIP TKDSVLTASW SSLSSYTSSS CSSSRTSSPP LSPFLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-151101551661Probable WRKY transcription factor 4
2lex_A2e-151101551661Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap917334
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937750.0AB493775.1 Arabidopsis thaliana At5g43290 mRNA for hypothetical protein, partial cds, clone: RAAt5g43290.
GenBankAK1764430.0AK176443.1 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL24-21-D20.
GenBankBT0104240.0BT010424.1 Arabidopsis thaliana At5g43290 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002862894.10.0probable WRKY transcription factor 49
RefseqXP_002863670.10.0probable WRKY transcription factor 49
SwissprotQ9FHR71e-159WRK49_ARATH; Probable WRKY transcription factor 49
TrEMBLD7MP910.0D7MP91_ARALL; Uncharacterized protein
STRINGscaffold_800734.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94052637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-156WRKY DNA-binding protein 49