PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 916468
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 186aa    MW: 21084.1 Da    PI: 7.0154
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
916468genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.11.2e-1615101196
             EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
             ffk l     ++++ l +p  f+++h +gk+ ++kt+ l++  s ++W vk+  ++      lt+GW++F+ +++L+ gD+vvF+++g++ f  +v++
  916468  15 FFKPL--LKGFRTH-LNIPVAFFSKHvEGKNDQNKTVNLRSdASEKTWLVKM--DGLN----LTDGWEDFAFSHDLRIGDIVVFRHEGEMVF--HVTA 101
             66777..6677777.9***********8888899******97888*******..5555....***********************9998888..6655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.85E-2011111IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-2211107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.05512105IPR003340B3 DNA binding domain
CDDcd100179.25E-1613100No hitNo description
SMARTSM010196.2E-2215105IPR003340B3 DNA binding domain
PfamPF023629.9E-112297IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MADQSLLHSP IKPHFFKPLL KGFRTHLNIP VAFFSKHVEG KNDQNKTVNL RSDASEKTWL  60
VKMDGLNLTD GWEDFAFSHD LRIGDIVVFR HEGEMVFHVT ALGPSCCEIQ YYTSSHNIND  120
DDRNDQTNIG KLLLSEMYNA KAKPKQRSQS DSSSDHSCFE GSVSPSSLRN NQLFLPRNFV  180
SSNSXX
Cis-element ? help Back to Top
SourceLink
PlantRegMap916468
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0029471e-138BT002947.1 Arabidopsis thaliana clone RAFL15-02-G15 (R20317) unknown protein (At1g26680) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020870941.16e-93B3 domain-containing protein REM17 isoform X2
RefseqXP_020875226.11e-99B3 domain-containing protein REM17, partial
SwissprotQ84WP34e-83REM17_ARATH; B3 domain-containing protein REM17
TrEMBLD7KQM93e-90D7KQM9_ARALL; T24P13.6
STRINGscaffold_704210.11e-136(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.17e-81B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]