PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 916405
Common NameARALYDRAFT_916405
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ZF-HD
Protein Properties Length: 135aa    MW: 14347.9 Da    PI: 4.9271
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
916405genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer47.54.1e-151322959
  ZF-HD_dimer 29 mpsegee.gtaaalkCaACgCHRnFHRrevee 59
                 mps++++ +++++lkCaACgCHRnFHRre+++
       916405  1 MPSPSSTpSDPTSLKCAACGCHRNFHRREPDD 32
                 677778889********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152310.742129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.1E-11530IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257740.0021429IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MPSPSSTPSD PTSLKCAACG CHRNFHRREP DDSSSVPPPS LLPSSSTTAT IEYQPHHRHH  60
PPPLLAPPLP RSPSSSSPTV AEGDRKRTCE FVVGQGDGPQ GPALLEEPVW DLTRETIAAE  120
IDDLEAAEVR ELGV*
Cis-element ? help Back to Top
SourceLink
PlantRegMap916405
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171881e-89AK117188.1 Arabidopsis thaliana mRNA, clone: RAFL16-72-M15.
GenBankAP0020491e-89AP002049.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYI13.
GenBankAY0931711e-89AY093171.1 Arabidopsis thaliana unknown protein (At3g28920) mRNA, complete cds.
GenBankAY1288201e-89AY128820.1 Arabidopsis thaliana unknown protein (At3g28920) mRNA, complete cds.
GenBankCP0026861e-89CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD7MJR22e-90D7MJR2_ARALL; Expressed protein
STRINGscaffold_704147.14e-91(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.14e-09homeobox protein 34