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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 916405 | ||||||||
Common Name | ARALYDRAFT_916405 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 135aa MW: 14347.9 Da PI: 4.9271 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 47.5 | 4.1e-15 | 1 | 32 | 29 | 59 |
ZF-HD_dimer 29 mpsegee.gtaaalkCaACgCHRnFHRrevee 59 mps++++ +++++lkCaACgCHRnFHRre+++ 916405 1 MPSPSSTpSDPTSLKCAACGCHRNFHRREPDD 32 677778889********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51523 | 10.742 | 1 | 29 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.1E-11 | 5 | 30 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 0.002 | 14 | 29 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MPSPSSTPSD PTSLKCAACG CHRNFHRREP DDSSSVPPPS LLPSSSTTAT IEYQPHHRHH 60 PPPLLAPPLP RSPSSSSPTV AEGDRKRTCE FVVGQGDGPQ GPALLEEPVW DLTRETIAAE 120 IDDLEAAEVR ELGV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 916405 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117188 | 1e-89 | AK117188.1 Arabidopsis thaliana mRNA, clone: RAFL16-72-M15. | |||
GenBank | AP002049 | 1e-89 | AP002049.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYI13. | |||
GenBank | AY093171 | 1e-89 | AY093171.1 Arabidopsis thaliana unknown protein (At3g28920) mRNA, complete cds. | |||
GenBank | AY128820 | 1e-89 | AY128820.1 Arabidopsis thaliana unknown protein (At3g28920) mRNA, complete cds. | |||
GenBank | CP002686 | 1e-89 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D7MJR2 | 2e-90 | D7MJR2_ARALL; Expressed protein | ||||
STRING | scaffold_704147.1 | 4e-91 | (Arabidopsis lyrata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 4e-09 | homeobox protein 34 |
Link Out ? help Back to Top | |
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Phytozome | 916405 |
Entrez Gene | 9304812 |