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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
916318 |
Common Name | ARALYDRAFT_916318 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
M-type_MADS |
Protein Properties |
Length: 337aa MW: 38528.1 Da PI: 7.9628 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
916318 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 79 | 3.3e-25 | 19 | 68 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
+ +++s +++++s+R+++i+KKA+EL++LCd+e++vi+++++g+l+++++
916318 19 SCSSYSLASTSLSNRLETIFKKASELCTLCDIEACVIYYGPDGELKTWPK 68
6789********************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 337 aa
Download sequence Send
to blast |
MTIRSLPSSS CCSSSSSSSC SSYSLASTSL SNRLETIFKK ASELCTLCDI EACVIYYGPD 60 GELKTWPKER EKVRDIALRY SQLNEALRRK KRVNLYDFLN KKKEKGLKNP NKRRKTSLKK 120 VNVLKYPISD HYSPDQISKL IQSLELNVSK VQERLRFVES QKHKETKPDH QSLASSSLNH 180 QTQSLNPSQF SLFIYNHGDN TLSQIPLSAS NFNPDLLQES GLMKQELCGY DQNMFMSDIT 240 NNKFQHPCVS NTEHYSVVPE PVNNYGLNQL MQDFYGCDQN LSNINSNNFQ HSFVSNTQHY 300 SAVQESVNDY GLMPHELYGY DHNMFTSEIY QQQPSF*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 100 | 114 | KKKEKGLKNPNKRRK |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB010072 | 0.0 | AB010072.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6. |
GenBank | BT030016 | 0.0 | BT030016.1 Arabidopsis thaliana At5g41200 mRNA, complete cds. |
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |