PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 916116
Common NameARALYDRAFT_916116
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 568aa    MW: 65316.3 Da    PI: 6.2511
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
916116genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.6e-07357398145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +g W +e+ el  +  k++G++ W+t a  mg  + +k++k+ w+
           916116 357 KGTWAKEDIELVMEFQKKHGND-WRTLADAMG--KHRKHVKDAWR 398
                      799*******************.********9..78999999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-6282353IPR009057Homeodomain-like
SMARTSM007177.4E-4283354IPR001005SANT/Myb domain
PROSITE profilePS500905.273286352IPR017877Myb-like domain
SMARTSM007172.4356403IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-5356398IPR009057Homeodomain-like
PROSITE profilePS500906.679357399IPR017877Myb-like domain
SuperFamilySSF466898.07E-6357418IPR009057Homeodomain-like
PfamPF139216.6E-8360418No hitNo description
PROSITE profilePS500906.667402470IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.8E-5405470IPR009057Homeodomain-like
SMARTSM0071723406472IPR001005SANT/Myb domain
SuperFamilySSF466892.64E-5450524IPR009057Homeodomain-like
PROSITE profilePS500907.549472525IPR017877Myb-like domain
SMARTSM0071771476527IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MAEEKKKKKS DTRVDSGEIV EEIVSKHTSM KKKEKKKKNR ESKDGFAGED EEIAGRGSEK  60
LGEDVVKKKS KDQMVVSEAD DALKKKIKET KVDSEAEDGV KKKKKKKKSK KESGSDVIGN  120
SESSKVCETP FVHIDDADKR KGKRKRDDCD LGAEENTDKE VKRKKSKKKK QSVDSEFEDN  180
NLNSTEDGVQ VEDSEVEENN KDSVKEAENK QSVDSEAEEI DLSSTKDAKK KRKKKQESVQ  240
SDKDVTTPSS KSTKRVKFSA EVEFFPSEDE ETEDDEEEVT VVRGKRYTKE EDELVKNAVL  300
EYIDNHALGE EGIKMVMDCK SHPQLKGCWK EIASALPWRA NNSVYNRAHT IFEAGSKGTW  360
AKEDIELVME FQKKHGNDWR TLADAMGKHR KHVKDAWRRG RLAEKKKGHW MREEYQKLFD  420
LVNKDLRMKA FQEKHSKHGM LKDNIPWMAI SDVLGTRDHV TCCSKWYEQL MSPMVAKGMW  480
ANVDDYRLLE ELLKLDAACI DDVDWDNLLE NRDGEACRKR WNQMIIHIGV PKSKTFAEQV  540
EILSERYCPD IAEDREDFDN RPYDPED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101110KKKKKKKSKK
2102110KKKKKKSKK
3139146RKGKRKRD
4143164RKRDDCDLGAEENTDKEVKRKK
5228234KKKRKKK
6229233KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap916116
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0100720.0AB010072.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6.
GenBankAY5196530.0AY519653.1 Arabidopsis thaliana MYB transcription factor (At5g41020) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002868619.10.0RNA polymerase I termination factor
TrEMBLD7MJ000.0D7MJ00_ARALL; Uncharacterized protein
STRINGscaffold_703858.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.10.0MYB_related family protein