PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 914342
Common NameARALYDRAFT_914342
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 194aa    MW: 21527.3 Da    PI: 5.867
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
914342genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.28.1e-3151041100
  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
             +Ca+Ck+l+++Ca++C+ ap+fp+++  +f  vh++FGa nv ++l++l ++e+r +a+++l y Aear rdP++G++g+il++++ l++++++++++ +e
  914342   5 RCAVCKILKETCAPGCISAPHFPSDD-TRFDDVHQVFGAVNVRNILNNLeSPEQRAIAANCLRYAAEARRRDPISGCHGMILHYKNILNNVEQDIKSAMNE 104
             6***********************99.89********************77888****************************************9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.4334105IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-295101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MASKRCAVCK ILKETCAPGC ISAPHFPSDD TRFDDVHQVF GAVNVRNILN NLESPEQRAI  60
AANCLRYAAE ARRRDPISGC HGMILHYKNI LNNVEQDIKS AMNELETYVG HDQVPKFYDL  120
PMPDDFLITP GSSDSFIEKI KSLNDVQKNQ LMQLQTAADV QMIMSNIFWK REDQKMDDGH  180
GHGADGASTS ASQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-2321088114LOB family transfactor Ramosa2.1
5ly0_B1e-2321088114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap914342
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869811.11e-145LOB domain-containing protein 32
SwissprotO496511e-103LBD32_ARATH; LOB domain-containing protein 32
TrEMBLD7ME151e-144D7ME15_ARALL; Uncharacterized protein
STRINGscaffold_702084.11e-145(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22700.12e-98LOB domain-containing protein 32