PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 913892
Common NameARALYDRAFT_913892, WRKY20
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 562aa    MW: 61490.2 Da    PI: 7.2718
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
913892genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.51e-31213270260
             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
             dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d+++++i+Y+g+H+h+k
  913892 213 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITDIIYKGTHDHPK 270
             8****************************************.***************85 PP
2WRKY104.46.3e-33384442159
             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
             ldDgy+WrKYGqK+v+g+++prsYY+Ct ++C+v+k+ver+++dpk+v++tYeg+H+h+
  913892 384 LDDGYRWRKYGQKVVRGNPNPRSYYKCTAPNCQVRKHVERASHDPKAVITTYEGKHDHD 442
             59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.388207271IPR003657WRKY domain
SuperFamilySSF1182907.85E-25210271IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.2E-27211271IPR003657WRKY domain
SMARTSM007748.5E-34212270IPR003657WRKY domain
PfamPF031062.4E-24213269IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-36369444IPR003657WRKY domain
SuperFamilySSF1182908.37E-29376444IPR003657WRKY domain
PROSITE profilePS5081137.126379444IPR003657WRKY domain
SMARTSM007742.6E-37384443IPR003657WRKY domain
PfamPF031069.3E-25385441IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MNPQANDRKE FHGDCSATGD LMAKHDSAGG GGNGGGGARY KLMSPAKLPI SRSTDITIPP  60
GLSPTSFLES PVFISNIKPE PSPTTGSLFK PRPVHISASS SSYTGRAFHQ NTFTEQKSSE  120
FEFRPPASNM VYAELGNHRS EPPVQFQGQG HGSSHSPSSL SDAAGSSSEL SRPTPPRQMT  180
PTSSDIPAGS DQEESIQTSQ NDPRGSTPSI LADDGYNWRK YGQKHVKGSE FPRSYYKCTH  240
PNCEVKKLFE RSHDGQITDI IYKGTHDHPK PQPGRRNSGG LGMAAQEERL DKYPSSTGRD  300
EKGSGAYNLS HPNEQTGNPE IPPVSASEDG GEAAASNRNK DEPDDDDPFS KRRRMDGAME  360
ITPLVKPIRE PRVVVQTLSE VDILDDGYRW RKYGQKVVRG NPNPRSYYKC TAPNCQVRKH  420
VERASHDPKA VITTYEGKHD HDVPTSKSSS NHDIQPRFRP DETDTISLNL GVGISSDGPN  480
HASNEHQHQN QQLVNQTHPN GVNFRFVHAS PMSSYYASLN SGMNQYSQRE TKNETQNGDI  540
SSLNNSSYPY PPNIGRIQSG P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36211444877Probable WRKY transcription factor 4
2lex_A2e-36211444877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap913892
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4258370.0AF425837.1 Arabidopsis thaliana WRKY transcription factor 20 (WRKY20) mRNA, complete cds.
GenBankAJ6304790.0AJ630479.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At4g26640D.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867553.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLD7MF750.0D7MF75_ARALL; WRKY DNA-binding protein 20
STRINGscaffold_701634.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein