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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 9138 | ||||||||
Common Name | MICPUCDRAFT_9138 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
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Family | C2H2 | ||||||||
Protein Properties | Length: 89aa MW: 10063.6 Da PI: 9.8295 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.6 | 5e-06 | 9 | 32 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirt.H 23 C+ Cgk+F + +L +H ++ H 9138 9 CEhpGCGKVFAWSQDLAKHVKKiH 32 77779****************999 PP | |||||||
2 | zf-C2H2 | 15.1 | 6.5e-05 | 39 | 63 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + C Cgk F k +L+ H rtH 9138 39 FHCAheGCGKAFHEKKLLTAHTRTH 63 678889******************9 PP | |||||||
3 | zf-C2H2 | 11.8 | 0.00076 | 69 | 89 | 1 | 19 |
EEET..TTTEEESSHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrH 19 + Cp C+k F+ + L H 9138 69 FACPhpGCDKAFRARNALAYH 89 789999**********99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 12.217 | 7 | 37 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0024 | 7 | 32 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.4E-9 | 8 | 33 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.38E-6 | 8 | 50 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 9 | 32 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.12 | 39 | 63 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.2E-10 | 39 | 62 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 14.835 | 39 | 68 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.92E-11 | 40 | 89 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 41 | 63 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.9E-13 | 63 | 89 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 150 | 69 | 89 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.037 | 69 | 89 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
NGPRPKVMCE HPGCGKVFAW SQDLAKHVKK IHNREAPKFH CAHEGCGKAF HEKKLLTAHT 60 RTHTDERPFA CPHPGCDKAF RARNALAYH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ubd_C | 8e-14 | 2 | 89 | 31 | 113 | PROTEIN (YY1 ZINC FINGER DOMAIN) |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003061423.1 | 2e-60 | predicted protein, partial | ||||
TrEMBL | C1N0P4 | 4e-59 | C1N0P4_MICPC; Predicted protein (Fragment) | ||||
STRING | XP_003061423.1 | 6e-60 | (Micromonas pusilla) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP10650 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 4e-13 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | 9138 |
Entrez Gene | 9686863 |
Publications ? help Back to Top | |||
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