 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | 913634 | ||||||||
| Common Name | ARALYDRAFT_913634 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
| Family | bHLH | ||||||||
| Protein Properties | Length: 1781aa MW: 197162 Da PI: 7.2671 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 46.3 | 7.4e-15 | 141 | 188 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
++hn +ErrRR++iN+++ +L+el+P + K +K+++L A+eY+k Lq
913634 141 EMHNLAERRRREKINEKMKTLQELIPRC-----NKSTKVSTLDAAIEYVKWLQ 188
58*************************8.....699*************9887 PP
| |||||||
| 2 | HLH | 46.3 | 7.6e-15 | 588 | 634 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+hn +ErrRR++iN+ + +L+el+P + K +K+++L A+eY+k Lq
913634 588 MHNLAERRRREKINENIKTLQELIPRC-----NKSTKVSTLDDAIEYVKWLQ 634
7*************************8.....699*************9887 PP
| |||||||
| 3 | HLH | 48.1 | 2.1e-15 | 1145 | 1192 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
++hn +ErrRR++iN+++ +L+el+P + K +K+++Le ++eY+ksLq
913634 1145 EMHNLAERRRREKINEKMKTLQELIPRC-----NKSTKVSTLEDVIEYMKSLQ 1192
58*************************8.....699****************9 PP
| |||||||
| 4 | HLH | 46.5 | 6.4e-15 | 1575 | 1622 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
++hn +ErrRR++iN+++ +L+el+P + K +K+++Le ++eY+ksL+
913634 1575 EMHNLAERRRREKINEKMKTLQELIPRC-----NKSTKVSTLEDVIEYVKSLE 1622
58*************************8.....699***************96 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 1.7E-18 | 136 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 17.326 | 138 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 1.87E-15 | 141 | 192 | No hit | No description |
| Pfam | PF00010 | 3.4E-12 | 141 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 3.2E-18 | 142 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 7.7E-18 | 144 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 2.30E-15 | 580 | 638 | No hit | No description |
| SuperFamily | SSF47459 | 8.37E-19 | 582 | 650 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 16.831 | 584 | 633 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 7.3E-19 | 588 | 643 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 4.4E-12 | 588 | 634 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 5.5E-17 | 590 | 639 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 2.36E-18 | 1140 | 1209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 17.396 | 1142 | 1191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 3.28E-15 | 1145 | 1196 | No hit | No description |
| Pfam | PF00010 | 6.3E-13 | 1145 | 1192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 9.4E-20 | 1146 | 1207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 1.1E-15 | 1148 | 1197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 2.22E-16 | 1570 | 1633 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 17.352 | 1572 | 1621 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 1.75E-14 | 1575 | 1626 | No hit | No description |
| Pfam | PF00010 | 2.6E-12 | 1575 | 1622 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 5.1E-18 | 1576 | 1630 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 5.9E-15 | 1578 | 1627 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1781 aa Download sequence Send to blast |
MEILWKSRQV VRTSQTQRPS PPPILRGSGS GSGSRGGEEN ALLPLPLPHP PPPLPQPPPH 60 QEEEMVSWLH HHLRQDYVCS KIIYSIPATN PQSSFSLEPP PLPPSAPYIL PASRLTCQLR 120 GVQGTEEARG STSRKRSRAA EMHNLAERRR REKINEKMKT LQELIPRCNK STKVSTLDAA 180 IEYVKWLQSQ IQMILMGQGM MPSMMNEENM QEFMPHMAMK MMGMNRPPFI PSPGTPFPSP 240 AQIAGVGPSQ AYPAARYPFP NIQTFDPSRV RLPSPVVNQT HFPAYMNPYS HFVGHHQMLQ 300 PPPPLQSQTT PQLSSGQASS SKEPEDKDSQ PKEFGFWFEI RGEDDIVELL WKSGRVVQSS 360 QTQRPSSDPP PILRGSGSGG GEEEENAPLP PPPPLPPLHH QNLFIQEDEM YSWLHQSYRQ 420 DYLCSELRYS GVASNPATHP QSSISPAPCP FAPYDQRGQT IATRRVENFM NFSWLRGNIF 480 TGGRVEAGVV RESIQLGSST TPSSSATESC VIPATEGTES RVSQTLAVPG LGQKGKAVVI 540 ETAETPSSGV CKAETEPVQI QPATIVEIQG TEEARGSMSR KRSRTAEMHN LAERRRREKI 600 NENIKTLQEL IPRCNKSTKV STLDDAIEYV KWLQSQIQMM STGQGMMPPM MYAGNTQQFM 660 PHMAMDMNRP PPFIPFPDTP FPRPAQMADV DPSYPAPRYP LSGIQTFDPS RVHLRSPQPN 720 PVSNQPQFPA YMNPYSQFAG LHQLQQPPPP PFQIRGEDDI VELLWKSGQL VRTTQTQRPS 780 SDKPSSPPPV LRGSGSGGGD ENAPLPLPLP QPPPPLHHQN LFIQEDELSS WLHNFYPGVT 840 STPATHPQSS VSLPPPSNAP YISSFFLHSL AFCNLMSLIL EFGFWIEIRG EDDVVELLWK 900 SSQVVQCSQT QRSIPPPIFR GSGSRSGEET ALPPPPLHPS QQILFIQEDE IASWLYHPLL 960 QDYLSSGVTS TPATHRQGSV SLAPPPPLSA PYGQITAARR TDNFMNFLRL KGNILTGGRV 1020 EAGPVVIEST QVGSSATPSS SATESCVIPV THGTESRATV IGGVSRTFAV PGFGRRGKAV 1080 AIDTAGTSSS GVCKAETEPV RIQPETETEI AEDRKQKERE ETIVEIQGTE EARGSTSRKR 1140 SRAAEMHNLA ERRRREKINE KMKTLQELIP RCNKSTKVST LEDVIEYMKS LQMQIQMMSM 1200 GHGMMPPMMN AENMQQFMPH MAMGMNRPPP FIHFPGTAFP RPGHMAGVGP SYPASRYPFP 1260 NTQASDPPRV QLPSLETDNP VPNQPLFPAY MNPYSQFVGL HQMQQPPPPL QVLGFRLKNR 1320 GEDDIVELFW KIGQVVRSSQ TEIPSSDPTP ILRGRGSRGG EENVPLPPPL PPPHHQNLFI 1380 QEDDMSSWIH HHPLLQDYLC SQLYASTPAP HPQSSVPLAP PQSSAPYGQI IIAPRREENV 1440 MNFLRLRGNI LTGGSVEAGP WIPVGSSATT SLSATESNLT PATESLPTVT GGVFHTFSVP 1500 SRGGKEKAVA IQTVCEIAGT SSSGVETEPV RIQPATETDI ADGRERKERE ETIAGIQGTE 1560 EARGSTSRKR SRAAEMHNLA ERRRREKINE KMKTLQELIP RCNKSTKVST LEDVIEYVKS 1620 LEMQIQHYVM NFRIMTEVLI SESMLLCKMM STGCSTMPMM YTSNTQQFMP HMAMGMNQTP 1680 AFIPFPRQAH MAGVGPSYLP PHNPFPNIQT FDPSRVWLQS PQPNPVPNQP QMNPYSQFVG 1740 HHQMQQPTFP PLQSQTTSQL SFGQASSSKE PDDQNNQPQG * |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 1567 | 1584 | RKRSRAAEMHNLAERRRR |
| 2 | 1580 | 1585 | ERRRRE |
| 3 | 1581 | 1586 | RRRREK |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | 913634 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AL035353 | 0.0 | AL035353.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F16A16 (ESSAII project). | |||
| GenBank | AL161573 | 0.0 | AL161573.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 69. | |||
| GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020873893.1 | 0.0 | transcription factor bHLH119 | ||||
| Swissprot | Q8GT73 | 0.0 | BH119_ARATH; Transcription factor bHLH119 | ||||
| TrEMBL | D7MD82 | 0.0 | D7MD82_ARALL; Uncharacterized protein | ||||
| STRING | scaffold_701376.1 | 0.0 | (Arabidopsis lyrata) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM9041 | 16 | 35 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G28811.1 | 0.0 | bHLH family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | 913634 |
| Entrez Gene | 9303509 |
| Publications ? help Back to Top | |||
|---|---|---|---|
|
|||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|