PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 913118
Common NameARALYDRAFT_913118
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 642aa    MW: 72203.9 Da    PI: 8.11
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
913118genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.29.5e-16531601775
             .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT-- CS
      B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLk 75 
             +++  ++g+l+lp +f+++++++k++  +++l +++gr+W+ +l++    r +s++++l++GW+e+++ang+k
  913118 531 TPSRESTGQLSLPMSFTRKNNINKAG--EVILLNQDGRKWSSYLQItglgRAGSEWFYLRRGWREMCEANGVK 601
             577888899************99887..7***************999999999999***************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0032032199238IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.6E-16206313IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509789.89E-21210451IPR017986WD40-repeat-containing domain
SMARTSM003203.2E-4244285IPR001680WD40 repeat
PROSITE profilePS502948.518251294IPR017986WD40-repeat-containing domain
PROSITE profilePS500828.871251285IPR001680WD40 repeat
PROSITE patternPS006780272286IPR019775WD40 repeat, conserved site
SMARTSM00320150380414IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.6E-16402448IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM010193.2E-4409509IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-9439510IPR015300DNA-binding pseudobarrel domain
PfamPF023626.5E-8445506IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-7449507IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.375454508IPR003340B3 DNA binding domain
CDDcd100173.61E-7454507No hitNo description
PROSITE profilePS508639.277525627IPR003340B3 DNA binding domain
SMARTSM010191.5E-8527626IPR003340B3 DNA binding domain
PfamPF023621.3E-15530601IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-11531601IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-11533601IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-10536601No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MDEAGRMRRH DETMTLIKNY LEQHGMSSTV QANNTIPTVD VENQRERVVQ YVKSLIEQDL  60
NVRSMFYPTV IEGQSRLQTL LEQSVNWQHR DCVHSPLFAS LLNDHHCTPQ PLHQNHQTLA  120
TNNLDMQASS SGLGNYDPML LEFNGQPQHS AGSHYSPSLY LTIEDDTVMP GWTINSDQSA  180
GFSNDIPSVV TVPPTFSLSD SVVKDIHVTE VVTAFEFHHH LPLVLAVGFS EGLVHTYNYI  240
HEQRPKPHLE IEAHSGPVND IVFYSSQGEL KIVTCGNDRH IKAWNSSNGL VYWKLTHTAP  300
LNSLALHQDG NKVQLFILDV FGTAMKPNIG YNGPLDSNPL LFPSDMNARL ELKFSGDGKR  360
LFCYGPGGLV EVDRESFETR RNYNSVMNPQ TKCMDICKNG YIAVGDEYCV KVWNVDSDHL  420
FRKIKIDAAV FPECPMVKFN REGSLLAVVS SLWRRWTIKL AKNISSAVFY IRLGWENVCS  480
VNGLSEGELC KFKLFQNGER PVLWLCPGEP GIGHKQKRTL DEVSKGKEKN TPSRESTGQL  540
SLPMSFTRKN NINKAGEVIL LNQDGRKWSS YLQITGLGRA GSEWFYLRRG WREMCEANGV  600
KGKGNQSTRK KRACETAPQP KNVKKAPRVG VEGRLNKRIS C*
Cis-element ? help Back to Top
SourceLink
PlantRegMap913118
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3363441e-90AF336344.1 Arabidopsis thaliana reproductive meristem protein 1 (REM1) mRNA, complete cds.
GenBankBT0038911e-90BT003891.1 Arabidopsis thaliana clone RAFL15-10-H22 (R20619) unknown protein (At4g31610) mRNA, complete cds.
GenBankBT0050021e-90BT005002.1 Arabidopsis thaliana clone U20619 unknown protein (At4g31610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872668.11e-163protein TPR3
RefseqXP_020872670.11e-163protein TPR3
RefseqXP_020872671.11e-163protein TPR3
RefseqXP_020872672.11e-163protein TPR3
TrEMBLD7M9A50.0D7M9A5_ARALL; Uncharacterized protein
STRINGscaffold_700860.10.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.12e-97B3 family protein