PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 913118 | ||||||||
Common Name | ARALYDRAFT_913118 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 642aa MW: 72203.9 Da PI: 8.11 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.2 | 9.5e-16 | 531 | 601 | 7 | 75 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT-- CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLk 75 +++ ++g+l+lp +f+++++++k++ +++l +++gr+W+ +l++ r +s++++l++GW+e+++ang+k 913118 531 TPSRESTGQLSLPMSFTRKNNINKAG--EVILLNQDGRKWSSYLQItglgRAGSEWFYLRRGWREMCEANGVK 601 577888899************99887..7***************999999999999***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00320 | 32 | 199 | 238 | IPR001680 | WD40 repeat |
Gene3D | G3DSA:2.130.10.10 | 1.6E-16 | 206 | 313 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SuperFamily | SSF50978 | 9.89E-21 | 210 | 451 | IPR017986 | WD40-repeat-containing domain |
SMART | SM00320 | 3.2E-4 | 244 | 285 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 8.518 | 251 | 294 | IPR017986 | WD40-repeat-containing domain |
PROSITE profile | PS50082 | 8.871 | 251 | 285 | IPR001680 | WD40 repeat |
PROSITE pattern | PS00678 | 0 | 272 | 286 | IPR019775 | WD40 repeat, conserved site |
SMART | SM00320 | 150 | 380 | 414 | IPR001680 | WD40 repeat |
Gene3D | G3DSA:2.130.10.10 | 1.6E-16 | 402 | 448 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM01019 | 3.2E-4 | 409 | 509 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.16E-9 | 439 | 510 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 6.5E-8 | 445 | 506 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.4E-7 | 449 | 507 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.375 | 454 | 508 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.61E-7 | 454 | 507 | No hit | No description |
PROSITE profile | PS50863 | 9.277 | 525 | 627 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-8 | 527 | 626 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-15 | 530 | 601 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-11 | 531 | 601 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-11 | 533 | 601 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.07E-10 | 536 | 601 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 642 aa Download sequence Send to blast |
MDEAGRMRRH DETMTLIKNY LEQHGMSSTV QANNTIPTVD VENQRERVVQ YVKSLIEQDL 60 NVRSMFYPTV IEGQSRLQTL LEQSVNWQHR DCVHSPLFAS LLNDHHCTPQ PLHQNHQTLA 120 TNNLDMQASS SGLGNYDPML LEFNGQPQHS AGSHYSPSLY LTIEDDTVMP GWTINSDQSA 180 GFSNDIPSVV TVPPTFSLSD SVVKDIHVTE VVTAFEFHHH LPLVLAVGFS EGLVHTYNYI 240 HEQRPKPHLE IEAHSGPVND IVFYSSQGEL KIVTCGNDRH IKAWNSSNGL VYWKLTHTAP 300 LNSLALHQDG NKVQLFILDV FGTAMKPNIG YNGPLDSNPL LFPSDMNARL ELKFSGDGKR 360 LFCYGPGGLV EVDRESFETR RNYNSVMNPQ TKCMDICKNG YIAVGDEYCV KVWNVDSDHL 420 FRKIKIDAAV FPECPMVKFN REGSLLAVVS SLWRRWTIKL AKNISSAVFY IRLGWENVCS 480 VNGLSEGELC KFKLFQNGER PVLWLCPGEP GIGHKQKRTL DEVSKGKEKN TPSRESTGQL 540 SLPMSFTRKN NINKAGEVIL LNQDGRKWSS YLQITGLGRA GSEWFYLRRG WREMCEANGV 600 KGKGNQSTRK KRACETAPQP KNVKKAPRVG VEGRLNKRIS C* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 913118 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF336344 | 1e-90 | AF336344.1 Arabidopsis thaliana reproductive meristem protein 1 (REM1) mRNA, complete cds. | |||
GenBank | BT003891 | 1e-90 | BT003891.1 Arabidopsis thaliana clone RAFL15-10-H22 (R20619) unknown protein (At4g31610) mRNA, complete cds. | |||
GenBank | BT005002 | 1e-90 | BT005002.1 Arabidopsis thaliana clone U20619 unknown protein (At4g31610) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020872668.1 | 1e-163 | protein TPR3 | ||||
Refseq | XP_020872670.1 | 1e-163 | protein TPR3 | ||||
Refseq | XP_020872671.1 | 1e-163 | protein TPR3 | ||||
Refseq | XP_020872672.1 | 1e-163 | protein TPR3 | ||||
TrEMBL | D7M9A5 | 0.0 | D7M9A5_ARALL; Uncharacterized protein | ||||
STRING | scaffold_700860.1 | 0.0 | (Arabidopsis lyrata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31610.1 | 2e-97 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 913118 |
Entrez Gene | 9303279 |