PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 912952 | ||||||||
Common Name | ARALYDRAFT_912952 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 374aa MW: 42506.7 Da PI: 5.0098 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.4 | 4.7e-17 | 12 | 100 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ffkv+ ++++s+ ++lp + h ++++ +kt++l+ + g sW+v + + +++ +++GW +Fv++n L +gD+++F ++g++ f v+++ 912952 12 FFKVF--VSHFTSDSMMLPIAYY-GH-LPSRLHKTVILRGPGGCSWNVAT--TINEKEVHFSQGWAKFVEDNTLSDGDILTFVYNGDHVF--EVSIY 100 88999..88999999*******9.55.4566999****************..88888899*************************99999..66666 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 7.90E-16 | 10 | 101 | No hit | No description |
PROSITE profile | PS50863 | 13.338 | 10 | 103 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.2E-20 | 10 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.49E-21 | 10 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 5.0E-13 | 12 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-14 | 12 | 101 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.32E-5 | 274 | 360 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.28 | 279 | 371 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 374 aa Download sequence Send to blast |
MAATDFVFPP RFFKVFVSHF TSDSMMLPIA YYGHLPSRLH KTVILRGPGG CSWNVATTIN 60 EKEVHFSQGW AKFVEDNTLS DGDILTFVYN GDHVFEVSIY RGYDACKEIS AVTEVEEDKE 120 DSVFSLSSED NDTCSQSVMK NTIPEGRDKG KSKVEVVGDP DDEEDSVYSA SGEETETDTD 180 SEFQVAKTTI PKSKKKGKKK EQVVESSDED SDSDSDYIET FGQLDIEENS NSEEDSSYAP 240 DDEGTSTCVK PKVANVKRKV EPKIKNPETY LDDPKNIHFE TNVKNRLYEL LVHAQLVKDY 300 CLKFGDHVYY IDRIGKLKAK TAKWKDQRVC IKKWMRICDR NELKKEDRIL CELLRKGTFV 360 YAIKLHIIRG KNL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 912952 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB493717 | 0.0 | AB493717.1 Arabidopsis thaliana At4g34400 mRNA for hypothetical protein, partial cds, clone: RAAt4g34400. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020873147.1 | 0.0 | B3 domain-containing protein At4g34400 | ||||
Refseq | XP_020873148.1 | 0.0 | B3 domain-containing protein At4g34400 | ||||
Refseq | XP_020873149.1 | 0.0 | B3 domain-containing protein At4g34400 | ||||
Swissprot | Q9SZ05 | 0.0 | Y3440_ARATH; B3 domain-containing protein At4g34400 | ||||
TrEMBL | D7MF20 | 0.0 | D7MF20_ARALL; Uncharacterized protein | ||||
STRING | scaffold_700694.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6555 | 16 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G34400.1 | 1e-161 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 912952 |
Entrez Gene | 9303194 |
Publications ? help Back to Top | |||
---|---|---|---|
|