PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 912952
Common NameARALYDRAFT_912952
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 374aa    MW: 42506.7 Da    PI: 5.0098
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
912952genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.44.7e-1712100197
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
             ffkv+   ++++s+ ++lp  +   h ++++ +kt++l+ + g sW+v    + + +++ +++GW +Fv++n L +gD+++F ++g++ f   v+++
  912952  12 FFKVF--VSHFTSDSMMLPIAYY-GH-LPSRLHKTVILRGPGGCSWNVAT--TINEKEVHFSQGWAKFVEDNTLSDGDILTFVYNGDHVF--EVSIY 100
             88999..88999999*******9.55.4566999****************..88888899*************************99999..66666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100177.90E-1610101No hitNo description
PROSITE profilePS5086313.33810103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.2E-2010101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-2110101IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.0E-1312103IPR003340B3 DNA binding domain
PfamPF023621.3E-1412101IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-5274360IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.28279371IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MAATDFVFPP RFFKVFVSHF TSDSMMLPIA YYGHLPSRLH KTVILRGPGG CSWNVATTIN  60
EKEVHFSQGW AKFVEDNTLS DGDILTFVYN GDHVFEVSIY RGYDACKEIS AVTEVEEDKE  120
DSVFSLSSED NDTCSQSVMK NTIPEGRDKG KSKVEVVGDP DDEEDSVYSA SGEETETDTD  180
SEFQVAKTTI PKSKKKGKKK EQVVESSDED SDSDSDYIET FGQLDIEENS NSEEDSSYAP  240
DDEGTSTCVK PKVANVKRKV EPKIKNPETY LDDPKNIHFE TNVKNRLYEL LVHAQLVKDY  300
CLKFGDHVYY IDRIGKLKAK TAKWKDQRVC IKKWMRICDR NELKKEDRIL CELLRKGTFV  360
YAIKLHIIRG KNL*
Cis-element ? help Back to Top
SourceLink
PlantRegMap912952
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937170.0AB493717.1 Arabidopsis thaliana At4g34400 mRNA for hypothetical protein, partial cds, clone: RAAt4g34400.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020873147.10.0B3 domain-containing protein At4g34400
RefseqXP_020873148.10.0B3 domain-containing protein At4g34400
RefseqXP_020873149.10.0B3 domain-containing protein At4g34400
SwissprotQ9SZ050.0Y3440_ARATH; B3 domain-containing protein At4g34400
TrEMBLD7MF200.0D7MF20_ARALL; Uncharacterized protein
STRINGscaffold_700694.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.11e-161B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Richter R, et al.
    Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications.
    PLoS Genet., 2019. 15(4): p. e1008065
    [PMID:30946745]