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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 912924 | ||||||||
Common Name | ARALYDRAFT_912924 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TALE | ||||||||
Protein Properties | Length: 537aa MW: 60304.3 Da PI: 6.9016 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.1 | 1.4e-08 | 338 | 375 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ qV++WF N R + 912924 338 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 375 664459******************************88 PP | |||||||
2 | BELL | 126.9 | 7.6e-41 | 204 | 275 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q++ +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFr+L+dai++qi 912924 204 ERQEMQSRLTKLLSMLDEVDRRYKQYYQQMQIVVSSFDVIAGYGAAKPYTALALQTISRHFRSLRDAISGQI 275 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.1E-73 | 139 | 273 | IPR006563 | POX domain |
Pfam | PF07526 | 1.4E-48 | 145 | 272 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.758 | 316 | 379 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-8 | 319 | 383 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.27E-10 | 319 | 380 | No hit | No description |
SuperFamily | SSF46689 | 1.58E-16 | 320 | 385 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-26 | 322 | 384 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.0E-17 | 336 | 375 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence Send to blast |
MENYPETKFL PGNSMIQNAT VSYSEGLAGR ERTEANNVSA SQERQALSRF GGISQMQNLD 60 QDFGSWRDQA SDRNGFQLMS AMAGATGILQ TGQGLSLSLG SQILPGIHQM SHQNMAPRAE 120 HFRGNEYATQ SFLVGNQNLD VVRKIPNSKY LKAAQQLLDE AVNVRKALKQ FQTEGDKNNE 180 NPQEPNQNTQ DSSTNPPAEI SHSERQEMQS RLTKLLSMLD EVDRRYKQYY QQMQIVVSSF 240 DVIAGYGAAK PYTALALQTI SRHFRSLRDA ISGQILVIRK CLGEQQDGSD GKRVGIISRL 300 KYVDQHLRQQ RGFMQPQAWR PQRGLPENSV LILRAWLFEH FLHPYPKDSD KIMLARQTGL 360 SRGQVSNWFI NARVRLWKPM VEEIYKEEFT ENDSNSSSEN TPKMSEIGHA AAVDEDRAQE 420 FSQDQTKPDH GHKYGEETRG MVQGSHMDGR KFMAVEPTYN VADMSRLGRG DVSLTLGLQN 480 SQGHGTVVAM SSEAAYNFSG VDIYENAIPG AEMEYVNPRS RQNRINSSQL VHDFVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-14 | 325 | 383 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 1e-14 | 325 | 383 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 912924 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT012291 | 0.0 | BT012291.1 Arabidopsis thaliana At4g34610 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002867111.1 | 0.0 | BEL1-like homeodomain protein 6 isoform X1 | ||||
Refseq | XP_020874835.1 | 0.0 | BEL1-like homeodomain protein 6 isoform X1 | ||||
Refseq | XP_020874836.1 | 0.0 | BEL1-like homeodomain protein 6 isoform X1 | ||||
Refseq | XP_020874838.1 | 0.0 | BEL1-like homeodomain protein 6 isoform X1 | ||||
Swissprot | O65685 | 0.0 | BLH6_ARATH; BEL1-like homeodomain protein 6 | ||||
TrEMBL | D7MEC2 | 0.0 | D7MEC2_ARALL; Uncharacterized protein | ||||
STRING | scaffold_700666.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2869 | 25 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34610.2 | 0.0 | BEL1-like homeodomain 6 |
Link Out ? help Back to Top | |
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Phytozome | 912924 |
Entrez Gene | 9303183 |
Publications ? help Back to Top | |||
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