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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
912083 |
Common Name | ARALYDRAFT_912083 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
B3 |
Protein Properties |
Length: 333aa MW: 38124.3 Da PI: 8.5847 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
912083 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 93.1 | 1.9e-29 | 34 | 118 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
f+kvltpsdv+k++rlv+pk++ae++ +g++ +++ l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L +gD+v F+
912083 34 FDKVLTPSDVGKLNRLVIPKQHAENYfplEGNQ-NGTVLDFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLFAGDTVSFH 118
89*********************999**96664.5679***********************************************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 333 aa
Download sequence Send
to blast |
MSTLNSDQEL ADIGASSSDN TNYFYSSERR EHMFDKVLTP SDVGKLNRLV IPKQHAENYF 60 PLEGNQNGTV LDFQDRNGKM WRFRYSYWNS SQSYVMTKGW SRFVKEKKLF AGDTVSFHRG 120 FIPDDNAPPE RRRKLMFIDW RHRAEINLVH NFNQHNFIFG SPTYPTARFY PVTPEYSMPS 180 HRSFPPFYHN QFQEREYLGY GYGRIVNGNG ARYYAGSPLD HHQWNLGRSE PLVYDSVPVF 240 PAGRVLPSAP PQPSTTKKLR LFGVDVEEST SSGETRGEMG VPGYSSSSPV VIRDDDQSFW 300 RSPRGEMGAS SSSAMQLSDD EEIKRKGKSI EF*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 8e-48 | 30 | 146 | 4 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 8e-48 | 30 | 146 | 4 | 116 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Regulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA3. {ECO:0000269|PubMed:16603651}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AL161492 | 0.0 | AL161492.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 4. |
GenBank | BT029520 | 0.0 | BT029520.1 Arabidopsis thaliana At4g01500 mRNA, complete cds. |
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
GenBank | F11O4 | 0.0 | AF096370.1 Arabidopsis thaliana BAC F11O4. |
GenBank | FJ873734 | 0.0 | FJ873734.1 Arabidopsis thaliana ecotype Landsberg erecta NGATHA4 (NGA4) mRNA, complete cds. |