PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 912083
Common NameARALYDRAFT_912083
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 333aa    MW: 38124.3 Da    PI: 8.5847
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
912083genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B393.11.9e-2934118183
             EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
             f+kvltpsdv+k++rlv+pk++ae++   +g++ +++ l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L +gD+v F+
  912083  34 FDKVLTPSDVGKLNRLVIPKQHAENYfplEGNQ-NGTVLDFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLFAGDTVSFH 118
             89*********************999**96664.5679***********************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-3926147IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-3030119IPR015300DNA-binding pseudobarrel domain
CDDcd100171.25E-2632119No hitNo description
PfamPF023622.7E-2634119IPR003340B3 DNA binding domain
SMARTSM010198.1E-2234128IPR003340B3 DNA binding domain
PROSITE profilePS5086313.91634143IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSTLNSDQEL ADIGASSSDN TNYFYSSERR EHMFDKVLTP SDVGKLNRLV IPKQHAENYF  60
PLEGNQNGTV LDFQDRNGKM WRFRYSYWNS SQSYVMTKGW SRFVKEKKLF AGDTVSFHRG  120
FIPDDNAPPE RRRKLMFIDW RHRAEINLVH NFNQHNFIFG SPTYPTARFY PVTPEYSMPS  180
HRSFPPFYHN QFQEREYLGY GYGRIVNGNG ARYYAGSPLD HHQWNLGRSE PLVYDSVPVF  240
PAGRVLPSAP PQPSTTKKLR LFGVDVEEST SSGETRGEMG VPGYSSSSPV VIRDDDQSFW  300
RSPRGEMGAS SSSAMQLSDD EEIKRKGKSI EF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-48301464116B3 domain-containing transcription factor NGA1
5os9_B8e-48301464116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA3. {ECO:0000269|PubMed:16603651}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00424DAPTransfer from AT4G01500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap912083
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1614920.0AL161492.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 4.
GenBankBT0295200.0BT029520.1 Arabidopsis thaliana At4g01500 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankF11O40.0AF096370.1 Arabidopsis thaliana BAC F11O4.
GenBankFJ8737340.0FJ873734.1 Arabidopsis thaliana ecotype Landsberg erecta NGATHA4 (NGA4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874976.20.0B3 domain-containing transcription factor NGA4
SwissprotO825950.0NGA4_ARATH; B3 domain-containing transcription factor NGA4
TrEMBLD7M4V00.0D7M4V0_ARALL; Uncharacterized protein
STRINGscaffold_604140.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136511527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.10.0B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]