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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 912076 | ||||||||
Common Name | ARALYDRAFT_912076 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 481aa MW: 54958.4 Da PI: 6.592 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 121.6 | 7.1e-38 | 6 | 137 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykveP.wdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgel 99 G+rF+Pt eel+++yLk+k g+k ++e+i+e++i++++P +dLpk k+++e+ ewyfFs+ + +++++++ +r+t sg+Wk tg d+++ +k +g + 912076 6 IGYRFSPTGEELINHYLKNKNLGTKtWLVDEAISEINILSHKPsKDLPKlaKIQSEDLEWYFFSPIEYTNRKKNEMKRTTGSGFWKPTGVDRKIRDKrgNGVV 108 69******************998884444567***********558995448888888**************************************9777788 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g kktLv+++g+ p+g++t W mhey++ 912076 109 IGFKKTLVYHEGKGPNGVRTPWAMHEYHI 137 ***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 43.759 | 4 | 155 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.35E-43 | 5 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-21 | 7 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051302 | Biological Process | regulation of cell division | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0031965 | Cellular Component | nuclear membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MVKDLIGYRF SPTGEELINH YLKNKNLGTK TWLVDEAISE INILSHKPSK DLPKLAKIQS 60 EDLEWYFFSP IEYTNRKKNE MKRTTGSGFW KPTGVDRKIR DKRGNGVVIG FKKTLVYHEG 120 KGPNGVRTPW AMHEYHITCL PHDKRKYVIC QVKYKGKAAD ISYEPSRSDS NTTRAINRAA 180 EPELQVEQPG RENFLGMSLD DLEQEDPKTC LQPQGPHLAL NDDEFIRGLR HVDREQVEYL 240 FANEENIDGL SMNDLRIPMI VQQEDLSEWD GFNADTFFSD NNNNNNLNVH QLTRYGDDYR 300 NAGYNGGNFE GVHPYQELIM QENRNDHMPK KPLTGTIDYS SDSSSDAGSI STTSYQGISS 360 PNNSVGSSSR RLSSCSSTDS CKDLQTCADP SISRETREYQ FTQRTVPSKQ EVKQEIPRDV 420 DASMNNESSL VKTEEKCLFI PEDAMERNRK TPRFIYLMII GFIRRIGFTT RQSLNPLKKF 480 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-22 | 7 | 137 | 18 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) mediated by calpain or its functional homolog. Regulates cytokinin signaling during cell division. {ECO:0000269|PubMed:17098812}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00425 | DAP | Transfer from AT4G01540 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 912076 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Stabilized by cytokinins. {ECO:0000269|PubMed:17098812}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493671 | 0.0 | AB493671.1 Arabidopsis thaliana At4g01540 mRNA for hypothetical protein, partial cds, clone: RAAt4g01540. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002872887.1 | 0.0 | NAC domain-containing protein 68 | ||||
Swissprot | A8MQY1 | 0.0 | NAC68_ARATH; NAC domain-containing protein 68 | ||||
TrEMBL | D7M4U2 | 0.0 | D7M4U2_ARALL; ANAC068/NTM1 | ||||
STRING | scaffold_604133.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1982 | 19 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01540.1 | 0.0 | NAC with transmembrane motif1 |
Link Out ? help Back to Top | |
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Phytozome | 912076 |
Entrez Gene | 9308956 |
Publications ? help Back to Top | |||
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