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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 911958 | ||||||||
Common Name | ARALYDRAFT_911958 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HB-other | ||||||||
Protein Properties | Length: 954aa MW: 105216 Da PI: 9.1508 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 18.1 | 4.7e-06 | 66 | 122 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ L+++F+ + +s++e +e+++ g+t +qV+ +F ++++ +k 911958 66 KRPRDLLNPKAVKYLQAVFAIKDAISKRESREISALFGITVAQVREFFVTQKTRVRK 122 799*********************************************999999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.572 | 63 | 123 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.9E-5 | 65 | 127 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-6 | 66 | 127 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.93E-4 | 66 | 123 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-5 | 66 | 125 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.20.930.10 | 1.9E-5 | 228 | 323 | IPR017923 | Transcription factor IIS, N-terminal |
SuperFamily | SSF47676 | 4.71E-6 | 231 | 324 | IPR017923 | Transcription factor IIS, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 954 aa Download sequence Send to blast |
MDAFKEEIEI GSSVESLMEL LDSQKVLFHS QIDQLQDVVV AQCKLTGVNP LAQEMAAGAL 60 SIKIGKRPRD LLNPKAVKYL QAVFAIKDAI SKRESREISA LFGITVAQVR EFFVTQKTRV 120 RKQVRLSREK VIVSNTHALQ EDGVLENSNA TNHVDPVPLN STHPEACSIS WGEGETVAFM 180 PPEDIPPDIS DSDKYFVENI FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI 240 LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RTSDISNRAK 300 GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGRSE 360 NVRRFESSQG PKLLLTSADD STKKQMLGSN PSYNKERRKV QMVEQPGQKA AGKSPQTVRI 420 GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SRAVVPEKPL ALQSAKDSLP 480 SQNNEAKSED TPVLSAVQPV NEPLAGQAVN GPLAGQPVNG PLAVQPVNGP SGGQPVNGPS 540 AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP LGMELDELWR 600 VAAGGNSKEA DVQRNRNRRE RETLYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE 660 ESLTEPQDSL DERRTAAGAA TTSSSLSSPE PDLELLAALL KNPDLVYALT SGKPRNLAGQ 720 DMIKLLDVIK TGAPHSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ 780 VGAAVARSGA QLRVASMQWH QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQAKLHHNL 840 HLQQQQPIST TSYAVREPVG QMGTATSGSW RSQQSQNSYY SHQENEIASA SQVSSYQGNN 900 QYMSSNPGYE SWSPDNSPSR NHPNMRGQQQ QQAASRKHDS STHPYWNQNK RWR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269|PubMed:10363371}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 911958 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK226746 | 0.0 | AK226746.1 Arabidopsis thaliana mRNA for luminidependens protein, complete cds, clone: RAFL07-75-C15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002872830.1 | 0.0 | homeobox protein LUMINIDEPENDENS | ||||
Swissprot | Q38796 | 0.0 | LUMI_ARATH; Homeobox protein LUMINIDEPENDENS | ||||
TrEMBL | D7M3G5 | 0.0 | D7M3G5_ARALL; Uncharacterized protein | ||||
STRING | scaffold_604015.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10876 | 24 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02560.2 | 0.0 | HB-other family protein |
Link Out ? help Back to Top | |
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Phytozome | 911958 |
Entrez Gene | 9310977 |
Publications ? help Back to Top | |||
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