PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

910778

Common Name

ARALYDRAFT_910778

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 273aa MW: 30915.2 Da PI: 9.5736

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
910778	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	62.7	4.2e-20	27	75	3	50
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50 ++++ ++++ +s R ++++KKA+ELS+LCd+ev+vi+++ +g+l ++++ 910778 27 SSSTAKKTTNLSMREETMFKKAFELSTLCDIEVCVIYYGRDGELiKTWP 75 6788889999********************************9856886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.6E-13	6	76	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.80E-22	7	102	No hit	No description
PROSITE profile	PS50066	10.75	29	77	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.9E-13	30	70	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.15E-14	30	111	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MDSSMSTKKK TKLSLRNQTC FKKSSLSSST AKKTTNLSMR EETMFKKAFE LSTLCDIEVC 60 VIYYGRDGEL IKTWPEDQSK VRDMAERFTK LNDRERRKKS TNLSLLLRKK ILDDNKLLEK 120 VLEMKDSLES GLRVLQDKLL LLQPENQIEL GQSRVVSSTT NPLSFPVDHH QQWTKPLVNG 180 VPNAEKDLST SSLNQHQSKF SVFLYNHDNG SFYQVPDSVS SFDQSTSTAL LGAQGSGLRS 240 NFDLPMVFPP QMQKQAPPLV LFDQFAPWNQ AP*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	910778

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493763	0.0	AB493763.1 Arabidopsis thaliana At5g27580 gene for hypothetical protein, partial cds, clone: RAAt5g27580.
GenBank	AC007478	0.0	AC007478.1 Arabidopsis thaliana BAC F15A18 from chromosome V near 68.5 cM, complete sequence.
GenBank	AY141226	0.0	AY141226.1 Arabidopsis thaliana MADS-box protein AGL89 mRNA, complete cds.
GenBank	BT025291	0.0	BT025291.1 Arabidopsis thaliana At5g27580 mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBank	DQ446991	0.0	DQ446991.1 Arabidopsis thaliana clone pENTR221-At5g27580 MADS-box family protein (At5g27580) mRNA, complete cds.
GenBank	DQ653312	0.0	DQ653312.1 Arabidopsis thaliana clone 0000012275_0000008899 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002872250.1	0.0	agamous-like MADS-box protein AGL93
Swissprot	Q7X9H9	1e-147	AGL93_ARATH; Agamous-like MADS-box protein AGL93
TrEMBL	D7M5F8	0.0	D7M5F8_ARALL; MADS-box family protein
STRING	scaffold_602835.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5753	9	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26950.1	1e-125	AGAMOUS-like 93

Link Out ? help Back to Top
Phytozome	910778
Entrez Gene	9310403

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]