PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 910526
Common NameARALYDRAFT_910526
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 277aa    MW: 30363.6 Da    PI: 5.41
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
910526genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_153.64.7e-17119170354
             XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
             +lkr rr+ +NRe+A+rsR+RK++++  Le+ v++L++ N++L k+l   ++
  910526 119 DLKRIRRMNSNRESAKRSRRRKQEYLVDLETQVDSLKGDNSTLYKQLIDATQ 170
             79*****************************************988765555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.3E-13112172No hitNo description
SMARTSM003382.0E-15117181IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.645119165IPR004827Basic-leucine zipper domain
PfamPF001702.5E-15119165IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.21E-11120170No hitNo description
CDDcd147026.84E-20122173No hitNo description
PROSITE patternPS000360124139IPR004827Basic-leucine zipper domain
PfamPF124988.5E-5188265IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDNHAAKDIG MKRSASELAL QEYLTTSPLD PCFDLINRDT CELRDILLWS EGLIPAGTFR  60
DAQSSICENL SADSPVSANK PEVREGVRRT VSGSSHVNSD EEDAETEAGQ SEMTNDPNDL  120
KRIRRMNSNR ESAKRSRRRK QEYLVDLETQ VDSLKGDNST LYKQLIDATQ QFRSAGTNNR  180
VLKSDVETLR VKVKLAEDLV ARGSLTSSLN QLLQTHLRPP SHSINSLHYT GNTSPAITVH  240
SDQSLFPGMT LSGQNSSSGL GNVSSEAVSC VSDIWP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135140SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap910526
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3102230.0AF310223.1 Arabidopsis thaliana bZIP protein BZO2H2 mRNA, complete cds.
GenBankAK2268730.0AK226873.1 Arabidopsis thaliana mRNA for bZIP protein BZO2H2, clone: RAFL09-07-B02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872127.10.0basic leucine zipper 9 isoform X1
SwissprotQ9FUD30.0BZIP9_ARATH; Basic leucine zipper 9
TrEMBLD7M3890.0D7M389_ARALL; Uncharacterized protein
STRINGscaffold_602583.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63702641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.11e-173basic leucine zipper 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]