PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 910251 | ||||||||
Common Name | ARALYDRAFT_910251, WRKY38 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | WRKY | ||||||||
Protein Properties | Length: 293aa MW: 33250.4 Da PI: 4.8179 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 62.3 | 8.3e-20 | 111 | 170 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 Dgy WrKYGqK++k+s++ rsYYrC+++ +C ++k+ ++ +++p v +tY g+H+++ 910251 111 DGYLWRKYGQKSIKKSNHQRSYYRCSYNkdhNCGARKHEQKIKDNPPVYRTTYFGHHTCK 170 9**************************99999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 19.634 | 104 | 172 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.2E-21 | 104 | 170 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.07E-20 | 107 | 171 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.0E-31 | 109 | 171 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.0E-21 | 111 | 170 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MEMNSPHEKA VQAIRYGLSC AMRLKMRIDH PMADGGPVSS YDLAKSIAES FSDAISILSA 60 KPTTEDDQFS DISSRDSFPS PQGSPSKKRK IDSTDSSENW RDDSPDPIYY DGYLWRKYGQ 120 KSIKKSNHQR SYYRCSYNKD HNCGARKHEQ KIKDNPPVYR TTYFGHHTCK TEHNLDAIFI 180 AGQDPVDDLK SAQMIRFGKD LNQEEGSYSK GFSLSVKSEE DITREQTMDQ YREITSNDQD 240 CQDVIEEDLS SPSGFYLPSS SSGSESADFN SDLLVDNLDS WDCYDQFYFG LH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 9e-15 | 111 | 170 | 10 | 69 | OsWRKY45 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00619 | PBM | Transfer from AT5G22570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 910251 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118884 | 0.0 | AK118884.1 Arabidopsis thaliana At5g22570 mRNA for putative WRKY transcription factor 38 (WRKY38), complete cds, clone: RAFL21-21-O16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002874078.1 | 0.0 | probable WRKY transcription factor 38 | ||||
Swissprot | Q8GWF1 | 1e-170 | WRK38_ARATH; Probable WRKY transcription factor 38 | ||||
TrEMBL | D7M0Z0 | 0.0 | D7M0Z0_ARALL; WRKY DNA-binding protein 38 | ||||
STRING | scaffold_602308.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13673 | 17 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22570.1 | 1e-165 | WRKY DNA-binding protein 38 |
Link Out ? help Back to Top | |
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Phytozome | 910251 |
Entrez Gene | 9310145 |
Publications ? help Back to Top | |||
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