PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 910218
Common NameARALYDRAFT_910218
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 334aa    MW: 37845.1 Da    PI: 4.9057
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
910218genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.98.5e-49141392128
     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103
              pGf+F+Ptd el+++yLk+k++g + ++ evi++++iy++ePwdLp k++ ++++ew+fF+ r kky++g++++ratk gyWkatgk+++v+s ++e++g+k
  910218  14 FPGFKFSPTDVELISYYLKRKMDGLERSV-EVIPDAEIYNFEPWDLPdKSIVKSDSEWFFFCARGKKYPHGSQNRRATKMGYWKATGKERDVKS-GSEVIGTK 114
             69************************999.99***************778888899**************************************.9******* PP

     NAM 104 ktLvfykgrapkgektdWvmheyrl 128
             +tLvf+ grapkge+tdW+mhey +
  910218 115 RTLVFHIGRAPKGERTDWIMHEYCM 139
             ***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-544155IPR003441NAC domain
PROSITE profilePS5100551.57313156IPR003441NAC domain
PfamPF023657.6E-2515138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009626Biological Processplant-type hypersensitive response
GO:0009910Biological Processnegative regulation of flower development
GO:0034976Biological Processresponse to endoplasmic reticulum stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEATAASVEA SMVFPGFKFS PTDVELISYY LKRKMDGLER SVEVIPDAEI YNFEPWDLPD  60
KSIVKSDSEW FFFCARGKKY PHGSQNRRAT KMGYWKATGK ERDVKSGSEV IGTKRTLVFH  120
IGRAPKGERT DWIMHEYCMK GVSLDDAMVV CRVKRNKEYQ SGMSQKAPEP KLAPEKHAIL  180
QNGATSSGSP SDWDNLVDFY LAGESGEKLL WEMAQSSENL QVHNDEDFFA DILRDEIINL  240
DEAVMRGNTR DEIPTLESAS MEIRVLPLPN MIDKQMSSLL EERPSQKMEG TDTMESLSNC  300
FVGLYSIKSV NRARWNVIIC LVALIAMLFY LEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-401515719166NO APICAL MERISTEM PROTEIN
1ut4_B5e-401515719166NO APICAL MERISTEM PROTEIN
1ut7_A5e-401515719166NO APICAL MERISTEM PROTEIN
1ut7_B5e-401515719166NO APICAL MERISTEM PROTEIN
3swm_A5e-401515722169NAC domain-containing protein 19
3swm_B5e-401515722169NAC domain-containing protein 19
3swm_C5e-401515722169NAC domain-containing protein 19
3swm_D5e-401515722169NAC domain-containing protein 19
3swp_A5e-401515722169NAC domain-containing protein 19
3swp_B5e-401515722169NAC domain-containing protein 19
3swp_C5e-401515722169NAC domain-containing protein 19
3swp_D5e-401515722169NAC domain-containing protein 19
4dul_A5e-401515719166NAC domain-containing protein 19
4dul_B5e-401515719166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap910218
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3856850.0AF385685.1 Arabidopsis thaliana AT5g22290/MWD9_7 mRNA, complete cds.
GenBankAY0780060.0AY078006.1 Arabidopsis thaliana AT5g22290/MWD9_7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874059.10.0NAC domain-containing protein 89
SwissprotQ94F580.0NAC89_ARATH; NAC domain-containing protein 89
TrEMBLD7M0V90.0D7M0V9_ARALL; Uncharacterized protein
STRINGscaffold_602275.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.10.0NAC domain containing protein 89
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]