 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
908762 |
| Common Name | ARALYDRAFT_908762 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
bHLH |
| Protein Properties |
Length: 541aa MW: 59968.6 Da PI: 7.2956 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 908762 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 55.5 | 9.9e-18 | 284 | 333 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
r +h++ E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eYI+ Lq
908762 284 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVIEYIQFLQ 333
889*************************9....9*******************9 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006351 | Biological Process | transcription, DNA-templated |
| GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway |
| GO:1902448 | Biological Process | positive regulation of shade avoidance |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 541 aa
Download sequence Send
to blast |
MELPQPRPFK TEGRKPTHDF LSLCSHSTVH PDPKPTPPSS QGSHLKTHDF LQPLECVGAK 60
EEVSRINTTT TSSEKPPPPA PPPPLQHVLP GGIGTYTISP IPYFHHHHQR IPKPELSPPM 120
MFNAAVQASG GNERNIVDEN SNSNCSSYAA ASSGFTLWDE SASGKKGQTR KENNVGERVN 180
MRADVAATVG QWPVVERRSQ SLTNNHMSGF SSRSSSQGSG LKSQSFMDMI RSAKGSSQED 240
DLDDEEDFIM KKESSSTSQS HRVDLRVKAD VRGSANDQKL NTPRSKHSAT EQRRRSKIND 300
RFQMLRQLIP NSDQKRDKAS FLLEVIEYIQ FLQEKADKYE TSYQGWNHEP AKLLNWQSNN 360
QQLVPEGVAF APKMEVEKNN IPVSVLATAQ GVVIDHPTTA TTSPFPLSIQ SNSFFSPVIA 420
GNPVPQFHTR VASSETVEPS PSSRSQTQPL KEEEEVEDEE DLEGNIRISS VYSQGLVKTL 480
REALENSGVD LTKASISVEI ELAKQSSSSF KDREVREPVS RTRNDDVKQT RKPKRLKTGQ 540
*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK353313 | 0.0 | AK353313.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-P07. |
