PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NF-YA

Protein Properties

Length: 270aa MW: 29777.3 Da PI: 9.4988

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
908579	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	89.4	5e-28	134	186	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++YVN+KQy++I++RRq+Rak+e+ l +++rkpy+h+SRh hA+rRpRgsgGrF 908579 134 GTIYVNSKQYHGIIRRRQSRAKAEK---L-SRCRKPYMHHSRHLHAMRRPRGSGGRF 186 689*******************9...6.888*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.6E-30	131	189	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	32.025	132	189	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	8.0E-24	135	186	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	137	157	IPR018362	CCAAT-binding factor, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MQTEELLSPP QTPWWNAFGS QQLTTESLSG DASDSFTGVK AVTPETEQGV VDKQSSTTLL 60 TFSPGGGKSS RDVPKPHVAF TMQSACFEFG FAQPMIYTKH PHVEQYYGVV SAYGSQRSSG 120 RLMLPLKMET EEDGTIYVNS KQYHGIIRRR QSRAKAEKLS RCRKPYMHHS RHLHAMRRPR 180 GSGGRFLNTK TADAAKQSKP SNSQSSEVFH PENRTINSSR EANGSNLSDS TVTNMDYFLS 240 SSVYSSGGMV MPIKWNAAAM DISCCNLNT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_A	2e-15	133	193	2	63	HAPB protein
4g92_A	2e-15	133	193	2	63	HAPB protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	908579

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY084643	0.0	AY084643.1 Arabidopsis thaliana clone 114015 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002871220.1	0.0	nuclear transcription factor Y subunit A-10
Swissprot	Q8LFU0	0.0	NFYAA_ARATH; Nuclear transcription factor Y subunit A-10
TrEMBL	D7LZR1	0.0	D7LZR1_ARALL; CCAAT-binding transcription factor (CBF-B/NF-YA) family protein
STRING	scaffold_600636.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3008	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.2	0.0	nuclear factor Y, subunit A10

Link Out ? help Back to Top
Phytozome	908579
Entrez Gene	9309329

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]