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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
907776 |
| Common Name | ARALYDRAFT_907776 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
bHLH |
| Protein Properties |
Length: 348aa MW: 38419.6 Da PI: 5.6481 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 907776 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 24 | 6.9e-08 | 158 | 204 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+a+n Er+ R++iN+++ +L++llP++ K + ++L +A+ Y+k+L
907776 158 EANNSPERKQRRDINKKMRTLQDLLPNS-----HKDDNESMLDEAIIYMKNL 204
58999**********************8.....699**************99 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 348 aa
Download sequence Send
to blast |
MELVFENGQI LAKGRVYNED FMKSIIHGGG GGANKNLGDT QVVPQSHVVP PHETEMLESN 60
RHVDDSTLIE TLKASSSKRM MVDYDNRMKI KFIPPDEQSV VAERMVESGF NTSSAGFTED 120
SEGSMYLSSS LDDESDDARP QVPARTRKAL VKRKRNAEAN NSPERKQRRD INKKMRTLQD 180
LLPNSHKDDN ESMLDEAIIY MKNLKLQVQM MTMGNRFVTP SMMLPLGLHY SQMGLAMGMG 240
MQMDAQQFLP AHVLGAGLPG INDSADMLRF LSHPGLMPMQ NSAPFTPTED CSPQSVPPSC 300
AAFPNQIPNP TSLSNLDGAS PYTRNQGTLT DEGILPGKIL ETREQMK*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT033108 | 0.0 | BT033108.1 Arabidopsis thaliana unknown protein (At3g62090) mRNA, complete cds. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Heyndrickx KS,Vandepoele K
Systematic identification of functional plant modules through the integration of complementary data sources.
Plant Physiol., 2012. 159(3): p. 884-901
[PMID:22589469] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Adams E,Diaz C,Hong JP,Shin R
14-3-3 proteins participate in light signaling through association with PHYTOCHROME INTERACTING FACTORs.
Int J Mol Sci, 2014. 15(12): p. 22801-14
[PMID:25501334] - Galvão VC,Collani S,Horrer D,Schmid M
Gibberellic acid signaling is required for ambient temperature-mediated induction of flowering in Arabidopsis thaliana.
Plant J., 2015. 84(5): p. 949-62
[PMID:26466761] - Gomez EJ,Gerhardt K,Judd J,Tabor JJ,Suh J
Light-Activated Nuclear Translocation of Adeno-Associated Virus Nanoparticles Using Phytochrome B for Enhanced, Tunable, and Spatially Programmable Gene Delivery.
ACS Nano, 2016. 10(1): p. 225-37
[PMID:26618393] - Ochoa-Fernandez R, et al.
Optogenetics in Plants: Red/Far-Red Light Control of Gene Expression.
Methods Mol. Biol., 2016. 1408: p. 125-39
[PMID:26965120] - Gangl R,Tenhaken R
Raffinose Family Oligosaccharides Act As Galactose Stores in Seeds and Are Required for Rapid Germination of Arabidopsis in the Dark.
Front Plant Sci, 2016. 7: p. 1115
[PMID:27507985] - Paik I,Kathare PK,Kim JI,Huq E
Expanding Roles of PIFs in Signal Integration from Multiple Processes.
Mol Plant, 2017. 10(8): p. 1035-1046
[PMID:28711729]
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