PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 906872
Common NameARALYDRAFT_906872
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 405aa    MW: 44444 Da    PI: 6.8078
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
906872genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.92.9e-15230284357
             XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
             ++kr+rr+ +NRe+ArrsR+RK++++ e  + v +L ae ++L+++l+ ++ +++
  906872 230 DVKRARRMLSNRESARRSRRRKQEQMNEFDTQVGQLRAEHSTLINRLSDMNHKYD 284
             68******************************************77776666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.4E-15228292IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.599230284IPR004827Basic-leucine zipper domain
PfamPF001702.4E-12231284IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.42E-10232282No hitNo description
Gene3DG3DSA:1.20.5.1709.0E-10232282No hitNo description
PROSITE patternPS000360235250IPR004827Basic-leucine zipper domain
PfamPF124983.4E-12299378IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000693Biological Processpositive regulation of seed maturation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MHIVFSVDDL TESFWPVPAP APSPGSSSTP APTQNVADGM TRSQSEWAFH RLLNELSGSD  60
SSPTTNAIER SPPPVQSLSR LEETVDETED VVEIQKPQNH RRLPADDQGK NRTRPPSSDP  120
LDSSAAGVVD PNQYHAILKS KLELACAAVA RRVGTVKPED SSASATNQKQ AQGSIVAQTS  180
PGASSVRFSP TTSTQKKPDV PARQTTSISS RDDSDDDDLD GDADNGDPTD VKRARRMLSN  240
RESARRSRRR KQEQMNEFDT QVGQLRAEHS TLINRLSDMN HKYDAASVDN RILRADIETL  300
RTKVKMAEET VKRVTGVNPL HWSRPNMGVP FNNTPNASSR IPPNSNHILK PAIPSTTTSA  360
GLAPNQRVET ANFLPEHVNR EAMQNPFAPD SNLYETLPHW NHKH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244251RRSRRRKQ
2246251SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'-ACGT-3' box, especially present in G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:19261733, ECO:0000269|PubMed:19531597}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap906872
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0575090.0AY057509.1 Arabidopsis thaliana bZIP transcription factor-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002877990.10.0basic leucine zipper 25
SwissprotQ9M1G60.0BZP25_ARATH; Basic leucine zipper 25
TrEMBLD7LUW00.0D7LUW0_ARALL; Uncharacterized protein
STRINGscaffold_502576.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58482645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54620.10.0basic leucine zipper 25
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Jain P, et al.
    A-ZIP53, a dominant negative reveals the molecular mechanism of heterodimerization between bZIP53, bZIP10 and bZIP25 involved in Arabidopsis seed maturation.
    Sci Rep, 2017. 7(1): p. 14343
    [PMID:29084982]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]