PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 906461
Common NameARALYDRAFT_906461
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 1293aa    MW: 141697 Da    PI: 6.9499
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
906461genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.5e-0712711292426
               ---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH    4 elCrffartGtCkyGdrCkFaHg 26  
               ++C+ f+++G+Ck+G++C+F H+
   906461 1271 KICK-FYESGYCKRGASCSFWHP 1292
               6899.8999***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.101.6E-7105165IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579033.54E-7106162IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.591110176IPR019787Zinc finger, PHD-finger
CDDcd155681.46E-19112157No hitNo description
SMARTSM002499.1E-7112158IPR001965Zinc finger, PHD-type
PROSITE patternPS013590113173IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.245.105.6E-23317399IPR003121SWIB/MDM2 domain
SuperFamilySSF475922.4E-20317394IPR003121SWIB/MDM2 domain
SMARTSM001515.1E-4320400IPR019835SWIB domain
PfamPF022013.4E-13324394IPR003121SWIB/MDM2 domain
PROSITE profilePS5136019.747453586IPR004343Plus-3 domain
SMARTSM007192.6E-48453563IPR004343Plus-3 domain
SuperFamilySSF1590421.7E-26454582IPR004343Plus-3 domain
PfamPF031265.8E-18458561IPR004343Plus-3 domain
SuperFamilySSF552771.57E-16713769IPR003169GYF domain
PROSITE profilePS5082915.717716770IPR003169GYF domain
CDDcd000722.38E-20716773No hitNo description
SMARTSM004443.6E-16717772IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.7E-17718770IPR003169GYF domain
PfamPF022134.5E-12718762IPR003169GYF domain
SuperFamilySSF902294.97E-612671291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.34212671292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-412711291IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-512711292IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1293 aa     Download sequence    Send to blast
MDNQQKQLQQ GVPELASLAG REESSVRGID LMRVDQCEEI GVNQVPALSV PALSVAGTVA  60
VPVSIEQEVK VVDEVAPVKR KRGRPPRAQA KTPLHIRPPP PPPRKDDKEE DVCFICFDGG  120
DLVLCDRRNC PKAYHPACIK RDEAFFRTTA KWNCGWHICG TCQKASSYMC YTCTFSVCKR  180
CIKDADYVIV RGNMGLCGTC IKPIMLIENI AQGDNEAVKV DFDDKLSWEY LFKVYWLSLK  240
EDLSLTVDEL TKANNPWKEV PNTAPNVESR NDHTNNRALD VAVNGTKRRK TSDSPTLPNK  300
LDGKNSNNIL KKAPRDTSWA TKELLEFVSF MKNGDTSVLS QFDVQGLLLD YIKKKNLRDP  360
LQKSQVLCDL MLVKLFGKQR VGHFEMLKLL ESHVLIQEKP KGDKTTNGET THAVPSQIEE  420
DSVHDPAVRD RRRKMRRKTD GRVQNENLDA YAAIDVHNIN LIYLRRKFLE SLLDDINKVH  480
EKVVGTILRI KVSGSDQKVD IHRLVQVVGT SKATASYQLG AKTTDVMLEI LNLDKREVIS  540
IDQLSDQNIT EDECKRLRQS IKCGLNKRLT VGDILKTAAT LQAMRTNEAL EAEILKLNHL  600
RDRAKKLELL KSPDERQRLL QEVPEVHTDP SMDPSHASSS DAGLGTTKQD NHIKAQSKGP  660
QNKGAILNNV GNNAQKKYDA PILRSRNVVH ADKDDCSKVH NNSSSIQETG KDDEESEIWH  720
YRDPTGKTQG PFSMVQLRRW KSSGHFPPYL RIWRAHENQD ESVLLTDALA GRFDKATTLP  780
SSALLPQEQK PFPHDSGRTG VDVNCLQKNQ TPVNTSATSS SSSTVTAHSN DPKEKQVVAL  840
VVCSGKVEDG NSVCPQSQVS CPASMSVVPG HVVSPDVRQT PGTDQSNAVR ADGNHNTTKT  900
LDDGTNGGSA INGSVQAPNL NQESHFLDFP SPTPKSSPED LEAQAAETIQ SLSSCVLVKG  960
PSGVTWSTTT TATTDAATTT SSVVITGGQL PQVTQQNAVV LAAPSVKPID LAADHATATQ  1020
TSDNTQVAQA SGWPAIVADP DECDESVSDL LAEVEAMEQN GLPSSPTSTF HCDDDDDLTK  1080
GPEKDFFNPV ARMSLTPETC RLDVSQASIL DNVSAGKNSM GTEAKDNTPF SHFGTAGPEL  1140
LLFAPPAPAP TSISHDLTLT TTALRLGSET TVEAGSVERF PKSVLGVSSE PSPRSFISHD  1200
SGSARGNTER SPRGSQQKRS NGHSRDRQWL NNSHNSSFNN SHNNRQWPYS NSHGYDHGSG  1260
SYAAHPPKGL KICKFYESGY CKRGASCSFW HP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A1e-151101791581Histone-lysine N-methyltransferase NSD3
4gnd_C1e-151101791581Histone-lysine N-methyltransferase NSD3
4gne_A1e-151101791581Histone-lysine N-methyltransferase NSD3
4gnf_A1e-151101791581Histone-lysine N-methyltransferase NSD3
4gng_A1e-151101791581Histone-lysine N-methyltransferase NSD3
4gng_D1e-151101791581Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap906461
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880063.10.0zinc finger CCCH domain-containing protein 44
SwissprotQ9SD340.0C3H44_ARATH; Zinc finger CCCH domain-containing protein 44
TrEMBLD7LTN20.0D7LTN2_ARALL; Uncharacterized protein
STRINGscaffold_502165.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77872130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding