PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

SRS

Protein Properties

Length: 370aa MW: 38079.9 Da PI: 7.5238

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
906453	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	230.1	4e-71	137	285	2	153
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkeletss 104 +sg++sCqdCGnqakkdCah+RCRtCCksrgf+C thv+stWvpaakrrerqqqla+ + ++ + e+ +kr+re+ +++s+l +t+++s++ le+ + 906453 137 GSGGVSCQDCGNQAKKDCAHMRCRTCCKSRGFECPTHVRSTWVPAAKRRERQQQLATVQPQTHLPRGESVPKRHRENLPATSSSLVCTRIPSHS---GLEVGN 236 57899***************************************************99999999*********************9995...78999 PP DUF702 105 lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +P+evss+avfrcvrvssv+dgeee+aYqtavsigGh+fkGiLyd G+ 906453 237 FPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDLGPG 285 ***********************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.4E-64	140	284	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.0E-27	142	184	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.0E-26	237	284	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010051	Biological Process	xylem and phloem pattern formation
GO:0010252	Biological Process	auxin homeostasis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048479	Biological Process	style development
GO:0048480	Biological Process	stigma development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MAGFFSLDGG GGGGGGGGNN QEDHRSNTNP PPPVSEAWLW YRNPNANANA NANAPSSSNA 60 ALGTLELWQN HNQQEIMFQH QQHQQRLDLY SSAAGLGVGP SNHNQFDISG ETSTAGAGRA 120 AAMMMIRSGG AGGGGGGSGG VSCQDCGNQA KKDCAHMRCR TCCKSRGFEC PTHVRSTWVP 180 AAKRRERQQQ LATVQPQTHL PRGESVPKRH RENLPATSSS LVCTRIPSHS GLEVGNFPAE 240 VSSSAVFRCV RVSSVEDGEE EFAYQTAVSI GGHIFKGILY DLGPGSSGGG GYNVVAPGES 300 SSGGGGAQQL NLITAGSVTV ATASSSTPNL GGIGSSSAAA ATYIDPAALY PTPINTFMAG 360 TQFFPNPRS*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MAGFFSLDGG GGGGGGGGNN QEDHRSNTNP PPPVSEAWLW YRNPNANANA NANAPSSSNA  60
ALGTLELWQN HNQQEIMFQH QQHQQRLDLY SSAAGLGVGP SNHNQFDISG ETSTAGAGRA  120
AAMMMIRSGG AGGGGGGSGG VSCQDCGNQA KKDCAHMRCR TCCKSRGFEC PTHVRSTWVP  180
AAKRRERQQQ LATVQPQTHL PRGESVPKRH RENLPATSSS LVCTRIPSHS GLEVGNFPAE  240
VSSSAVFRCV RVSSVEDGEE EFAYQTAVSI GGHIFKGILY DLGPGSSGGG GYNVVAPGES  300
SSGGGGAQQL NLITAGSVTV ATASSSTPNL GGIGSSSAAA ATYIDPAALY PTPINTFMAG  360
TQFFPNPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00613	PBM	Transfer from AT3G51060	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	906453

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT029509	0.0	BT029509.1 Arabidopsis thaliana At3g51060 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002876066.1	0.0	protein SHI RELATED SEQUENCE 1
Swissprot	Q9SD40	0.0	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	D7LTM5	0.0	D7LTM5_ARALL; Uncharacterized protein
STRING	scaffold_502157.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3419	28	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	1e-176	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	906453
Entrez Gene	9312134

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]