PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

906289

Common Name

ARALYDRAFT_906289

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bZIP

Protein Properties

Length: 181aa MW: 21022.8 Da PI: 8.7028

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
906289	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.4	2e-10	68	126	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ +rk +NRe+A+rsR++K++ +ee +L+++N++L ++l ++++ k+e+ 906289 68 RKKKRKLSNRESAKRSREKKQKHLEEMSMQLNQLKTQNQELTNQLRYVLYHYQQTKMEN 126 6899**************************************99998888888888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.3E-10	61	112	No hit	No description
SMART	SM00338	6.9E-13	64	128	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	5.3E-10	65	112	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.932	66	129	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.48E-9	68	117	No hit	No description
CDD	cd14702	9.21E-17	69	113	No hit	No description
PROSITE pattern	PS00036	0	71	86	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MMSTISPVFS TELTSVPAFE TGFTPWDISH LFSVFDSSMD QIPVSAHDYG SVNQISTDVA 60 LTESTDERKK KRKLSNRESA KRSREKKQKH LEEMSMQLNQ LKTQNQELTN QLRYVLYHYQ 120 QTKMENDRLR MEHRSLQDKL LNIRQVLMFR QIERSSLNCS TWPCSNSTVV TVQQDPSIML 180 *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	73	ERKKKRKL
2	67	88	RKKKRKLSNRESAKRSREKKQK
3	68	73	KKKRKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	906289

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY085307	0.0	AY085307.1 Arabidopsis thaliana clone 14432 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002877702.1	1e-132	basic leucine zipper 8
TrEMBL	D7LSY0	1e-131	D7LSY0_ARALL; BZIP transcription factor family protein
STRING	scaffold_501993.1	1e-132	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3338	26	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49760.1	1e-89	basic leucine-zipper 5

Link Out ? help Back to Top
Phytozome	906289
Entrez Gene	9313770