PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 906088
Common NameARALYDRAFT_906088
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 448aa    MW: 49576.6 Da    PI: 4.8997
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
906088genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH421.5e-13113136326
              S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
               e C+f++rtG Ck+G++CkF+H+
   906088 113 AEDCSFYMRTGSCKFGSSCKFNHP 136
              689********************9 PP
2zf-CCCH32.61.4e-10163183525
              --SGGGGTS--TTTTT-SS-S CS
  zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
               C++++rtG CkyG++C+F+H
   906088 163 DCKYYFRTGGCKYGETCRFNH 183
              5******************** PP
3zf-CCCH40.25.6e-13205230126
              --S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
              +++++C++++r+G Ck+G+ CkF+H+
   906088 205 PGEVECPYYMRNGSCKFGAECKFNHP 230
              5789*********************9 PP
4zf-CCCH21.73.6e-07347372227
              -S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
              +++ C+++++tG Ck+  +Ck++H++
   906088 347 DQPDCSYYMKTGDCKFKFNCKYHHPK 372
              6899********************96 PP
5zf-CCCH352.4e-11394417326
              S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
              + +C +++r+G+Ck+G+ C+F H+
   906088 394 QNICTYYSRYGICKFGPACRFDHS 417
              679********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.4E-7110137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.263110138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6111137IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-11113136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5116135IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-4158185IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.46158186IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-8163183IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5163186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-5164184IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-7204231IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.516204232IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-10206230IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5208231IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4210229IPR000571Zinc finger, CCCH-type
SMARTSM003560.086345372IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.15345373IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4347372IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-5349375IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6389417IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511391419IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-5391418IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8394417IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4396418IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MVNSEETADG FEPKPVSQSY SGDSSADRSL SDLNNAAEDL SDKLKNVGLD EVTKEKSETI  60
VSVSESNGGL DSNVVVTSNQ EEEEEEDGDD YGDGWSENES EMRETVYPVR PGAEDCSFYM  120
RTGSCKFGSS CKFNHPLARK IQIARDNKVR EKEEDGGKLG LIDCKYYFRT GGCKYGETCR  180
FNHTLPKSCL ASAPELNFLG LPIRPGEVEC PYYMRNGSCK FGAECKFNHP DPTTIGGTDS  240
LSFHGNNGVS IGTFSPKSAF QASSTSWTSP RHVNGTSPFI PVMLSQTHGV PSQTPEWNGY  300
QASVYSSERG LFSPSTTYLM NNLSAETSML SQYRHQMPAE EFPERPDQPD CSYYMKTGDC  360
KFKFNCKYHH PKNRLPKLPP YALNDKGLPL RPDQNICTYY SRYGICKFGP ACRFDHSVQP  420
PYSTESSQAI VEPPQVSANG NESDGWN*
Cis-element ? help Back to Top
SourceLink
PlantRegMap906088
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0331390.0BT033139.1 Arabidopsis thaliana unknown protein (At3g48440) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875904.10.0zinc finger CCCH domain-containing protein 43 isoform X2
SwissprotQ9STM40.0C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLD7LRW70.0D7LRW7_ARALL; Zinc finger (CCCH-type) family protein
STRINGscaffold_501792.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]