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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 905966 | ||||||||
Common Name | ARALYDRAFT_905966 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 171aa MW: 19428.8 Da PI: 10.2107 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 64.6 | 2.9e-20 | 60 | 163 | 2 | 110 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103 ppGf+F Ptd+el+ L+++ ++ l++ +++v+iy+++P++L +k+++ + kew+f s+r ++ gkr++ +++gyW+ +k++ + ++ ++g k 905966 60 PPGFKFVPTDQELI---LQNNKDSWLLKV--PVHHVKIYESNPQQLSEKYEKgNYKEWFFMSERIMISKGGKRQKHGVSAGYWNPYRASKKINA-GNGVIGYK 156 9*************...666655555555..69*************965544266699999999999999******99***************9.9999**** PP NAM 104 ktLvfyk 110 + L +y 905966 157 TALDYYI 163 ******4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-22 | 51 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 18.876 | 59 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-9 | 60 | 166 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MEIPPRNKRK ERSSPERQKQ PPELQTQPPS HNPDPNNPSS SSSSVAENFS SSSTKPFIFP 60 PGFKFVPTDQ ELILQNNKDS WLLKVPVHHV KIYESNPQQL SEKYEKGNYK EWFFMSERIM 120 ISKGGKRQKH GVSAGYWNPY RASKKINAGN GVIGYKTALD YYILGNNQTT * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 905966 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010431407.1 | 5e-67 | PREDICTED: NAC transcription factor 29-like | ||||
TrEMBL | D7LND3 | 1e-121 | D7LND3_ARALL; Uncharacterized protein | ||||
STRING | scaffold_501670.1 | 1e-122 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2793 | 15 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56530.1 | 5e-49 | NAC domain containing protein 64 |
Link Out ? help Back to Top | |
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Phytozome | 905966 |
Entrez Gene | 9313627 |