PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 905858
Common NameARALYDRAFT_905858
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 590aa    MW: 67028.6 Da    PI: 5.2843
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
905858genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS406.32.9e-1242145841374
    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
             +++lL++cA+av+s d+++a++ L++++e++s++gd++qRl  +f+eAL+ar+++   ++   + + ++s++++++ l+a+k f++++P+l ++++taN++I+
  905858 214 MRNLLMQCAQAVASFDQRRASEKLKEIREHSSSHGDATQRLGYHFAEALEARITG---TMTTPI-SATSSRTSMVDILKAYKGFVQACPTLIMCYFTANRTIV 312
             579****************************************************...333223.333334569***************************** PP

    GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaV 204
             e +++++++HiiDf+i +G+QWp+L+qaL++R+ gpp lR+Tg++ p+sg   +e++eetg+rL++f+++++vpfe+++ +ak++e+++l++L +++gE+++V
  905858 313 ELASKATTLHIIDFGILYGFQWPCLIQALSKRDTGPPLLRVTGIELPQSGfrPSERVEETGRRLKRFCDKFKVPFEYSF-IAKNWENITLDDLVINSGETTVV 414
             *************************************************9*****************************.7********************** PP

    GRAS 205 nlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre 307
             n++l+l++++de+vsl+s+rd+ Lkl+++++P+++v++e +  +ns+ Fl+rf eal ++s+lfd++e++l+++++ r+ vErel+ r++++v+aceg+er++
  905858 415 NCILRLQYTPDETVSLNSPRDTALKLFRDINPDLFVFAEINGTYNSPFFLTRFREALFHCSSLFDMYETTLSEDDNCRTLVERELIIRDAMSVIACEGSERFA 517
             ******************************************************************************************************* PP

    GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
             r et+++W+ r+ +aGF+p++l+++++k+ k ++++ + + + ++++++++++gWk+r L++vS+W+
  905858 518 RPETYKQWQVRILRAGFRPAKLNKQIVKDGKEIVKQRYHKDFVIDNDNNWMFQGWKGRVLYAVSCWK 584
             **************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.945188564IPR005202Transcription factor GRAS
PfamPF035141.0E-121214584IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MDAILPVPVD GFRFDNGSGS CCKPRNNLES GTTNRFTCFN ESESQSNPSP TESKVCSDYL  60
PVFKYINDML MEEDLEGQSC MLEDSLALQA AERSFYEVLQ DQTPPPSDQI SGDLEDGSLG  120
NFSSITSLHQ PEVSEESTRR YRHRDDDEDD DLEGGRKSKL PAISTVDELA EKFEEVLLVC  180
QKNDQGEATE KKTRQAKGSS NRSKQQKSDQ PVDMRNLLMQ CAQAVASFDQ RRASEKLKEI  240
REHSSSHGDA TQRLGYHFAE ALEARITGTM TTPISATSSR TSMVDILKAY KGFVQACPTL  300
IMCYFTANRT IVELASKATT LHIIDFGILY GFQWPCLIQA LSKRDTGPPL LRVTGIELPQ  360
SGFRPSERVE ETGRRLKRFC DKFKVPFEYS FIAKNWENIT LDDLVINSGE TTVVNCILRL  420
QYTPDETVSL NSPRDTALKL FRDINPDLFV FAEINGTYNS PFFLTRFREA LFHCSSLFDM  480
YETTLSEDDN CRTLVERELI IRDAMSVIAC EGSERFARPE TYKQWQVRIL RAGFRPAKLN  540
KQIVKDGKEI VKQRYHKDFV IDNDNNWMFQ GWKGRVLYAV SCWKPAKKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-442185848375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap905858
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2264190.0AK226419.1 Arabidopsis thaliana mRNA for scarecrow-like protein, complete cds, clone: RAFL06-09-N12.
GenBankAL1333140.0AL133314.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F12A12.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875794.10.0scarecrow-like protein 30 isoform X1
SwissprotQ9SNB80.0SCL30_ARATH; Scarecrow-like protein 30
TrEMBLD7LN250.0D7LN25_ARALL; Scarecrow transcription factor family protein
STRINGscaffold_501562.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]