PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 905851 | ||||||||
Common Name | ARALYDRAFT_905851 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 98aa MW: 11332 Da PI: 5.914 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 24.9 | 5.8e-08 | 11 | 51 | 6 | 48 |
NAM 6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 +F+Pt++e++++yLk+k++g+++ +i d+y +e w L 905851 11 HFDPTNQEVINDYLKRKLRGEDCGD--FIVMKDVYAMESWLLL 51 8*********************766..6788899999999885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-6 | 11 | 54 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MEYCEEDEEI HFDPTNQEVI NDYLKRKLRG EDCGDFIVMK DVYAMESWLL LLFSRKTSGI 60 TFRQELRPPR RRLMVVSTRS GRSPETTPMA STAKIIG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 905851 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL133314 | 1e-48 | AL133314.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F12A12. | |||
GenBank | CP002686 | 1e-48 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002880870.1 | 2e-20 | NAC domain-containing protein 55 | ||||
TrEMBL | D7LN19 | 3e-66 | D7LN19_ARALL; Predicted protein | ||||
STRING | scaffold_501555.1 | 5e-67 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2607 | 13 | 58 |
Link Out ? help Back to Top | |
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Phytozome | 905851 |
Entrez Gene | 9313562 |