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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | 905051 | ||||||||
| Common Name | ARALYDRAFT_905051 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family | LBD | ||||||||
| Protein Properties | Length: 120aa MW: 13972.3 Da PI: 10.999 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 43.1 | 1.2e-13 | 38 | 102 | 2 | 67 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAea 67
C C++++++ ++dC++a fp+++ +kf +++ +FG ++++ +lk+l++ +r+ ++++l++e+ +
905051 38 CRFCRLQNKQ-VNDCIFASLFPSNDLRKFTIMNLVFGPETLTFFLKDLSHMDRKYTTRTLYFEGSV 102
999****996.789*************************************************875 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50891 | 10.099 | 36 | 119 | IPR004883 | Lateral organ boundaries, LOB |
| Pfam | PF03195 | 1.8E-11 | 38 | 102 | IPR004883 | Lateral organ boundaries, LOB |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 120 aa Download sequence Send to blast |
MHSPHLSSIL QVAKIISNII SFIVFSRERQ IKMNPNLCRF CRLQNKQVND CIFASLFPSN 60 DLRKFTIMNL VFGPETLTFF LKDLSHMDRK YTTRTLYFEG SVSRSMGERS LRKNSKFRS* |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | 905051 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | NP_001326100.1 | 1e-23 | LOB domain-containing protein 26 | ||||
| Refseq | NP_001326101.1 | 1e-23 | LOB domain-containing protein 26 | ||||
| Refseq | NP_189433.1 | 1e-23 | LOB domain-containing protein 26 | ||||
| Swissprot | Q9LIJ0 | 1e-24 | LBD26_ARATH; LOB domain-containing protein 26 | ||||
| TrEMBL | D7LPM5 | 1e-81 | D7LPM5_ARALL; Uncharacterized protein | ||||
| STRING | scaffold_500755.1 | 2e-82 | (Arabidopsis lyrata) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM21012 | 4 | 5 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G27940.1 | 5e-27 | LOB domain-containing protein 26 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | 905051 |
| Entrez Gene | 9313152 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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