PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 904425
Common NameARALYDRAFT_904425
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 154aa    MW: 17846.9 Da    PI: 10.4821
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
904425genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271e-08349348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48
                     +W   Ed  l +++k++G ++W++I++ +   +R+  +ck r+ ++l
           904425  3 NWKSHEDVCLMEGIKRYGLRRWDKISASLLlSHRSIAECKKRFESFL 49
                     7******************************9**********98775 PP
2Myb_DNA-binding27.47.8e-095392345
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                      WT e+d++l d+ + + +  W+tI   mg  R +++c  r+ 
           904425 53 TWTYEDDKKLSDLAQIHKPS-WTTIGDLMG--RDGNSCFRRFI 92
                     7****************966.********8..******99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.0E-4151IPR001005SANT/Myb domain
PROSITE profilePS5129412.448153IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.5E-10352IPR009057Homeodomain-like
SuperFamilySSF466898.63E-16390IPR009057Homeodomain-like
PfamPF002498.6E-7347IPR001005SANT/Myb domain
CDDcd001679.34E-6349No hitNo description
SMARTSM007170.215297IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-65393IPR009057Homeodomain-like
PfamPF139211.8E-85498No hitNo description
PROSITE profilePS500906.265495IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MANWKSHEDV CLMEGIKRYG LRRWDKISAS LLLSHRSIAE CKKRFESFLE PKTWTYEDDK  60
KLSDLAQIHK PSWTTIGDLM GRDGNSCFRR FISLPSLARE NNIQAGGMKM SKPMKKFKPK  120
RKVAQLEEIP AFGDRSEMKK RKGYCMKTKV QLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3jb9_W2e-1241389155Pre-mRNA-splicing factor cdc5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119141KRKVAQLEEIPAFGDRSEMKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap904425
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875107.11e-111cell division cycle 5-like protein
TrEMBLD7LPY81e-110D7LPY8_ARALL; Uncharacterized protein
STRINGscaffold_500129.11e-111(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.19e-14cell division cycle 5