 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
902470 |
| Common Name | ARALYDRAFT_902470, FES1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
C3H |
| Protein Properties |
Length: 591aa MW: 64583.7 Da PI: 6.5218 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 902470 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 20.6 | 7.9e-07 | 101 | 121 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
+C+ffa+ G+C G +CkF H+
902470 101 PCKFFAK-GWCFNGVSCKFLHV 121
7******.*************7 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010220 | Biological Process | positive regulation of vernalization response |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 591 aa
Download sequence Send
to blast |
MSDSDMDIDD DEVEQKVQVH TIVRESELLD KPPIQASNSQ SDVKRHSVTT PLDEQSKIIK 60
EQAFAQYNGT LSRFPAPGIP PKSFFPGGEG NEPEQKRAAL PCKFFAKGWC FNGVSCKFLH 120
VKENSNCFSQ QLAENSMAGN GGILSDLERR ILDSKEGVRV SQLSENGMTS LHTRDDISFV 180
NPPGSQRVFS SMSFVNPPGS QRVFPVSNEM RFMPSFENIG RESLKQTYGD VTDNRSLVIN 240
NSNSFTLRSS FVHEHRPSIS SYLKTDMGSS GPAWTGSLSS SVPMNERAST VGHFENGNNI 300
SGSGSLPTLQ GIAVSSDKGA EGNTTSNKKK VSSDDWEPSE PFKASFTIPP YILPSSDALY 360
DPFTDIENLG GDRALNASLS SKGEHARKNS RQQKDGDSAS GPQAREIKND DKSSSCSQNQ 420
HQETVTRSLE AHGVVEGVAT SVVDQNDATT PSKEISSAAA AENRVVLKRS KPAGHDSWHR 480
SDGSSYKKTM KSDEIDGEVR SDAGMKVMRQ FRTAVVETVK EMLKPLWREG RLTKDVHNMI 540
VKKAAEKVVS AAVQFHQVPT DTESVDQYLG LSATRIVKLV EGYVEKYGKP *
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator involved in the FRIGIDA-mediated vernalization pathway, but not in the autonomous flowering pathway. Acts cooperatively with FRI (FRIGIDA) or FRL1 (FRIGIDA-LIKE 1) to promote FLC (FLOWERING LOCUS C) expression. Required for the stabilization of the FRI-C complex. {ECO:0000269|PubMed:16291783, ECO:0000269|PubMed:21282526}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK228866 | 0.0 | AK228866.1 Arabidopsis thaliana mRNA for zinc finger (CCCH type) protein - like, clone: RAFL16-19-E15. |
