PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 902034 | ||||||||
Common Name | ARALYDRAFT_902034, HSI2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 799aa MW: 87567.4 Da PI: 8.0546 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.6 | 2.2e-18 | 300 | 395 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+l+ sd+++ grlvlpk +ae++ +++ e++ l+++d +g++W+++++y +++s++yvl+ G ++ L++gD+v+F++++ +++l + 902034 300 FEKTLSASDAGRIGRLVLPKACAEAYfpPISQSEGIPLKIQDVRGKEWTFQFRYwpNNNSRMYVLE-GVTPCIQSMMLQAGDTVTFSRVD-PGGKLIM 395 99**************************666678889*****************89999999***9.********************765.6665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-28 | 297 | 407 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.22E-19 | 297 | 395 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.68E-23 | 298 | 395 | No hit | No description |
PROSITE profile | PS50863 | 10.616 | 300 | 401 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-22 | 300 | 400 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.8E-16 | 300 | 395 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.224 | 546 | 596 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.1E-8 | 552 | 593 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 799 aa Download sequence Send to blast |
MFEVKMVSKM CMNASCGTTS TVEWKKGWPL RSGLLADLCY RCGSAYESSL FCEQFHKDQS 60 GWRECYLCNK RLHCGCIASK VTIELMDYGG VGCSTCTCCH QLNLNTRGEN PGVFSRLPMK 120 PLADRQHVNG ESGMNIDGGR NEAGLFSQPL VMGGDKREEF MPHRGFGQLM NSENTTTGYR 180 LDAAGEMHES SPSQPSLNMG LAVNPFSPSF ATEGLEGKKH IGASQPNMVH GSASNILQKP 240 SKPAISTPPV ASKSAQARIG RPPVEGRGKG HLLPRYWPKY TDKEVQQISG NLNLNIVPLF 300 EKTLSASDAG RIGRLVLPKA CAEAYFPPIS QSEGIPLKIQ DVRGKEWTFQ FRYWPNNNSR 360 MYVLEGVTPC IQSMMLQAGD TVTFSRVDPG GKLIMGSRKA ANAGDMQGCG LTNGTSTEDT 420 SSSGVTENPP SINGSSCPSL IPQELNGMPE NLSSQKSETN GGRIGDDPAR VKEKKRTRTI 480 GAKNKRLLLH SEESMELRLT WEEAQDLLRP SPSAKPTIVV IEEKEIEEYD EPPVFGKRTI 540 VTTRPSGEQE RWATCDDCSK WRRLPVDALL PFKWTCIDNV WDVSRCSCSA PEESLKELEN 600 VLKVGREYKK RRTGESQAAK SQQEPCGLDA LASAAVLGDT IGEPEVATTT RHPRHRAGCS 660 CIVCIQPPSG KGRHKPTCGC TVCSTVKRRF KTLMMRRKKK QLERDVTAAE DKKKKDMELA 720 ESDKSKEEKE VNTARIDLNS DPYNKEDAEA VAVEKEESRK RAIGQCSGVV AQGAGDVLGV 780 TELEGEAKKV GEEPRVSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 3e-88 | 278 | 408 | 2 | 132 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 686 | 698 | KRRFKTLMMRRKK |
2 | 697 | 714 | KKKQLERDVTAAEDKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL2/HSL1. {ECO:0000269|PubMed:15894743, ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 902034 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB206553 | 0.0 | AB206553.1 Arabidopsis thaliana HSI2 mRNA for transcription factor B3-EAR motif, complete cds. | |||
GenBank | AY062492 | 0.0 | AY062492.1 Arabidopsis thaliana putative VP1/ABI3 family regulatory protein (At2g30470; T6B20.17) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002881112.1 | 0.0 | B3 domain-containing transcription repressor VAL1 | ||||
Swissprot | Q8W4L5 | 0.0 | VAL1_ARATH; B3 domain-containing transcription repressor VAL1 | ||||
TrEMBL | D7LC55 | 0.0 | D7LC55_ARALL; High-level expression of sugar-inducible gene 2 | ||||
STRING | scaffold_401535.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6923 | 24 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 0.0 | high-level expression of sugar-inducible gene 2 |
Link Out ? help Back to Top | |
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Phytozome | 902034 |
Entrez Gene | 9317179 |