PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 901538
Common NameARALYDRAFT_901538
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 324aa    MW: 36924.5 Da    PI: 5.396
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
901538genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.51.8e-21101573127
     NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkya....tgkrknra........tksgyWkatgkdke 91 
              G++F+Pt +e++ eyLk+k++g+++    +i   d+y  ePw L++  +   +e+ewy+Fs+r + ++    +gk ++r+        +++g W+  gk++ 
  901538  10 EGIQFDPTYQEVIEEYLKRKLRGEDCGD--FILMKDVYAKEPWLLDHpnNSFFKEDEWYYFSTRTQISEkkigRGKYPKRKitgdnndgIDRGNWRINGKENI 110
             599*********************9665..788899*********74224344889******997765533336777777556776666679********999 PP

     NAM  92 vlskkgelvglkktLvfy...........kgrapkgektdWvmheyr 127
             + + +g+ +g+kk L++            +g +  g+++ W+m+e+ 
  901538 111 IDEDTGAIIGIKKNLTYKgtktnkkqkrgDGASAPGSESGWIMDEFV 157
             99999*************8888776665547777788********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.7978179IPR003441NAC domain
SuperFamilySSF1019412.22E-2510179IPR003441NAC domain
PfamPF023651.0E-1410157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MTTEYCKEDE GIQFDPTYQE VIEEYLKRKL RGEDCGDFIL MKDVYAKEPW LLDHPNNSFF  60
KEDEWYYFST RTQISEKKIG RGKYPKRKIT GDNNDGIDRG NWRINGKENI IDEDTGAIIG  120
IKKNLTYKGT KTNKKQKRGD GASAPGSESG WIMDEFVIVL PKPDEDKFQE LVLCKIHKKK  180
KSKKDKKDHQ HEASSSSEQQ PIKKRKSKKS KKEHESVLAA SSEPQQPLLC GGNESEIPKI  240
ASSPCSTAET ERNEEQSGEG NMVHQTDVLA TEKNAMEMTR EEQGDWTADM YDIFVKGLEA  300
CDMMINNADQ PPISIPPVEY PWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-181118220168NO APICAL MERISTEM PROTEIN
1ut4_B4e-181118220168NO APICAL MERISTEM PROTEIN
1ut7_A4e-181118220168NO APICAL MERISTEM PROTEIN
1ut7_B4e-181118220168NO APICAL MERISTEM PROTEIN
3swm_A6e-181118223171NAC domain-containing protein 19
3swm_B6e-181118223171NAC domain-containing protein 19
3swm_C6e-181118223171NAC domain-containing protein 19
3swm_D6e-181118223171NAC domain-containing protein 19
3swp_A6e-181118223171NAC domain-containing protein 19
3swp_B6e-181118223171NAC domain-containing protein 19
3swp_C6e-181118223171NAC domain-containing protein 19
3swp_D6e-181118223171NAC domain-containing protein 19
4dul_A4e-181118220168NAC domain-containing protein 19
4dul_B4e-181118220168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap901538
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880870.10.0NAC domain-containing protein 55
TrEMBLD7LFH90.0D7LFH9_ARALL; Uncharacterized protein
STRINGscaffold_401039.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.12e-17NAC domain containing protein 35