PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

901535

Common Name

ARALYDRAFT_901535

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 284aa MW: 32136.1 Da PI: 6.7953

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
901535	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	39.6	1.6e-12	3	117	38	127
NAM 38 diykvePwdLpk..kvkaeekewyfFskrdkkya....tgkrknra........tksgyWkatgkdkevlskkgelvglkktLvfy...........kgrapk 115 d+y ePw L++ + +e+ewy+Fs+r + ++ +gk ++r+ +++g W+ gk++ + + +g+ +g+kk L++ +g + 901535 3 DVYAKEPWLLDHpnNSFFKEDEWYYFSTRTQISEkkigRGKYPKRKitgdnndgIDRGNWRINGKENIIDEDTGAIIGIKKNLTYKgtktnkkqkrgDGASAP 105 899*****74224334889**997765533336777777556776666679****99999999*********88887766655477777 PP NAM 116 gektdWvmheyr 127 g+++ W+m+e+ 901535 106 GSESGWIMDEFV 117 88******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	22.927	1	139	IPR003441	NAC domain
SuperFamily	SSF101941	6.93E-18	3	139	IPR003441	NAC domain
Pfam	PF02365	1.0E-6	14	117	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MKDVYAKEPW LLDHPNNSFF KEDEWYYFST RTQISEKKIG RGKYPKRKIT GDNNDGIDRG 60 NWRINGKENI IDEDTGAIIG IKKNLTYKGT KTNKKQKRGD GASAPGSESG WIMDEFVIVL 120 PKPDEDKFQE LVLCKIHKKK KSKKDKKDHQ HEASSSSEQQ PIKKRKSKKS KKEHESVLAA 180 SSEPQQPLLC GGNESEIPKI ASSPCSTAET ERNEEQSGEG NMVHQTDVLA TEKNAMEMTR 240 EEQGDWTADM YDIFVKGLEA CDMMINNADQ PPISIPPVEY PWI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-13	3	142	53	168	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-13	3	142	53	168	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-13	3	142	53	168	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-13	3	142	53	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-12	3	142	56	171	NAC domain-containing protein 19
3swm_B	1e-12	3	142	56	171	NAC domain-containing protein 19
3swm_C	1e-12	3	142	56	171	NAC domain-containing protein 19
3swm_D	1e-12	3	142	56	171	NAC domain-containing protein 19
3swp_A	1e-12	3	142	56	171	NAC domain-containing protein 19
3swp_B	1e-12	3	142	56	171	NAC domain-containing protein 19
3swp_C	1e-12	3	142	56	171	NAC domain-containing protein 19
3swp_D	1e-12	3	142	56	171	NAC domain-containing protein 19
4dul_A	9e-13	3	142	53	168	NAC domain-containing protein 19
4dul_B	9e-13	3	142	53	168	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	901535

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL133314	4e-76	AL133314.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F12A12.
GenBank	CP002686	4e-76	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002880867.1	0.0	NAC domain-containing protein 19
TrEMBL	D7LFH6	0.0	D7LFH6_ARALL; Uncharacterized protein
STRING	scaffold_401036.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2607	13	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52890.1	2e-11	NAC domain containing protein 19

Link Out ? help Back to Top
Phytozome	901535
Entrez Gene	9315099