PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 901062 | ||||||||
Common Name | ARALYDRAFT_901062 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 632aa MW: 71981.7 Da PI: 9.4854 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.5 | 3.2e-15 | 127 | 212 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffk l + s+ l++p f+ ++ +g + e+kt l++ s +Wevk+ ++++ lt+GWkeF+ +++L+ gD+vvF+ +++++f +v++ 901062 127 FFKPL--LPGFHSH-LTIPVAFFLKNiEGRH-EQKTAELRSdASKITWEVKI--DGQR----LTDGWKEFALSHDLRIGDIVVFRQERDMCF--HVTM 212 66666..5667777.*******999975554.55789998868889******..9888....***********************8888999..7765 PP | |||||||
2 | B3 | 79.9 | 2.5e-25 | 257 | 350 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + ++ ++l+ +rl lp++f++e+g++k++ ++++l++e+gr+W++ l+ +k+ g++++++GW++F++angL++g +++Fkl++ +++++v+++f+k 901062 257 ANVTVSSLRDDRLNLPRSFVRENGLDKRC-VEIVLMNEKGRTWTLDLKGNKSYGTTYIKRGWRSFCHANGLRAGSIFTFKLIK-KGKTPVLRLFSK 350 567889999*****************866.8****************99999999***************************9.88889**99987 PP | |||||||
3 | B3 | 73.5 | 2.6e-23 | 398 | 488 | 4 | 96 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + ++ ++l+ ++l+lpk+f++++g++++++ +++l++e+grsW + l+ +++ g++++++GW++F++ ngL++g f +Fkl+++ e++lv+++ 901062 398 ANITRSSLRYDILYLPKRFMRANGLDTRCG-EMILMNEKGRSWALDLKRKNSCGTTYIKRGWRSFCRVNGLRAGSFYTFKLIQN-ERTLVLRL 488 567899999*****************9987.****************98888888***************************95.55567666 PP | |||||||
4 | B3 | 56.4 | 5.3e-18 | 544 | 625 | 16 | 99 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +lp +f++ +g+++ k++++ d++g +W+ l++++ ++r+ l +GWkeF++ang+k g++++++l+++s+++ v+k+++k 901062 544 QTLPIPFTKVNGIQN--AKKMSFLDKHGVKWSTSLRFEQDRQRMRLVGGWKEFCDANGVKIGESIMLELIWESDKSSVLKFCSK 625 489*****9999885..558****************************************************999999999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-23 | 124 | 229 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.519 | 124 | 216 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.55E-19 | 125 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.44E-15 | 126 | 213 | No hit | No description |
SMART | SM01019 | 1.8E-22 | 127 | 216 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.3E-10 | 135 | 209 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-24 | 247 | 346 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.45E-22 | 252 | 353 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 16.412 | 254 | 351 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.16E-24 | 254 | 349 | No hit | No description |
SMART | SM01019 | 1.3E-33 | 255 | 351 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-23 | 256 | 350 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-22 | 388 | 487 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-21 | 393 | 494 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 15.89 | 395 | 492 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.51E-21 | 395 | 488 | No hit | No description |
SMART | SM01019 | 4.8E-31 | 396 | 492 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-21 | 397 | 489 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-16 | 520 | 625 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.76E-15 | 524 | 623 | No hit | No description |
SMART | SM01019 | 2.6E-16 | 530 | 626 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.47E-17 | 545 | 626 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.1E-17 | 545 | 625 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.196 | 546 | 625 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 632 aa Download sequence Send to blast |
MAKPAKGKNK SLLDCSPLLE ELPQSPDCRN RGNPEANPRK CNMAKPAKDK NKSLLDCSPL 60 LEELPQSPDC RNRGNPEANP RKCNMAKPAK DKNKSLLDCS PLLEELPQSP DCKLKDLGIL 120 RMAKQHFFKP LLPGFHSHLT IPVAFFLKNI EGRHEQKTAE LRSDASKITW EVKIDGQRLT 180 DGWKEFALSH DLRIGDIVVF RQERDMCFHV TMLGPSCCEI QYGSCLDNKN NLGKIQRKKN 240 PRRETESSSL DPSCFVANVT VSSLRDDRLN LPRSFVRENG LDKRCVEIVL MNEKGRTWTL 300 DLKGNKSYGT TYIKRGWRSF CHANGLRAGS IFTFKLIKKG KTPVLRLFSK EPEEQANEAS 360 LSPELESNED SNLGKIQRRK NPSRETESSS LDPSCFVANI TRSSLRYDIL YLPKRFMRAN 420 GLDTRCGEMI LMNEKGRSWA LDLKRKNSCG TTYIKRGWRS FCRVNGLRAG SFYTFKLIQN 480 ERTLVLRLVP KEPEEEEEKA NVESLSTEPS DEESSQDEKS SQECSKTMEK KSILIHLRCL 540 NLSQTLPIPF TKVNGIQNAK KMSFLDKHGV KWSTSLRFEQ DRQRMRLVGG WKEFCDANGV 600 KIGESIMLEL IWESDKSSVL KFCSKVMQEI K* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 901062 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020885365.1 | 0.0 | B3 domain-containing protein REM14 isoform X1 | ||||
Swissprot | O23076 | 0.0 | REM15_ARATH; Putative B3 domain-containing protein REM15 | ||||
TrEMBL | D7LIX6 | 0.0 | D7LIX6_ARALL; Uncharacterized protein | ||||
STRING | scaffold_400563.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00260.1 | 0.0 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 901062 |
Entrez Gene | 9316693 |
Publications ? help Back to Top | |||
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