PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 901028
Common NameARALYDRAFT_901028
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 411aa    MW: 46863.8 Da    PI: 9.8779
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
901028genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.91.4e-2152142395
             EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
      B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
              +l+++++l+++ l+lp ++++++g++ +  ++++l+d  +rsWe++l+++k+ g++++t+GW++F+++ng k+g f+vF+l+  +e+++++ 
  901028  52 VALVKASNLEEDTLYLPQDCTRSNGLNRK-CRKIVLTDGGSRSWEMELKFKKNLGSFYITRGWRHFCDENGKKAGSFFVFELTI-KEGTPLLY 142
             5688999******************9965.57*************************************************864.66667665 PP
2B351.42e-16161250194
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
             f++v + +d lk++rl+l+++f++++g+ +  +k++tl  ++g +   +l +r +sgr+ l++GW eFvkangLk g  ++++ ++ ++ ++ +
  901028 161 FVTVRVVPDCLKRCRLYLSRRFLKNNGLGE--TKMVTLLGTDGTRRLANL-VRETSGRMSLGRGWVEFVKANGLKIGQYFTLESIWAND-SPIL 250
             77888889***************9999885..569********9999999.799*****************************888533.3455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-2140154IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-2045147IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.73450147IPR003340B3 DNA binding domain
CDDcd100171.91E-1951143No hitNo description
SMARTSM010199.3E-2451147IPR003340B3 DNA binding domain
PfamPF023623.3E-2052142IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.3E-16157258IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-16158250IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.053161256IPR003340B3 DNA binding domain
PfamPF023627.1E-15161252IPR003340B3 DNA binding domain
SMARTSM010197.4E-21161256IPR003340B3 DNA binding domain
CDDcd100171.57E-13169245No hitNo description
Gene3DG3DSA:2.40.330.109.6E-9304398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.71E-10305400IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.0E-9308404IPR003340B3 DNA binding domain
PROSITE profilePS508639.023308404IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MFNVSACDIR DKPSPSNIEI KKLVLLEREK KVRKINSQSE ASTSSSDNSS FVALVKASNL  60
EEDTLYLPQD CTRSNGLNRK CRKIVLTDGG SRSWEMELKF KKNLGSFYIT RGWRHFCDEN  120
GKKAGSFFVF ELTIKEGTPL LYFSPSESTI NYTKLPTQKR FVTVRVVPDC LKRCRLYLSR  180
RFLKNNGLGE TKMVTLLGTD GTRRLANLVR ETSGRMSLGR GWVEFVKANG LKIGQYFTLE  240
SIWANDSPIL KLSSTNDSKS DKRKHRENFP VASHKEFVST EASDGNEPEK DMNTEEMINQ  300
SSLIDNRFVI LALEPEDAKA GMLYLPSHFM KANGIDKIGK IYMLGTNEME WWWGNLLTRD  360
GIVSVGCRWR YFCKSNGVKI GQYFKLEYMY KYDTRPVLKF VPSPGSKSYV *
Cis-element ? help Back to Top
SourceLink
PlantRegMap901028
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0072661e-101AC007266.5 Arabidopsis thaliana chromosome 2 clone F27A10 map mi238, complete sequence.
GenBankCP0026851e-101CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880608.10.0B3 domain-containing protein REM-like 2
SwissprotF4IQL70.0REML2_ARATH; B3 domain-containing protein REM-like 2
TrEMBLD7LIB90.0D7LIB9_ARALL; Uncharacterized protein
STRINGscaffold_400529.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78281641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24696.10.0B3 family protein