PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 901025
Common NameARALYDRAFT_901025
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 334aa    MW: 37027.1 Da    PI: 8.7295
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
901025genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.6e-1582174197
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
             f++  +++d +k++r+ lp +f++++g++k++  ++ +  ++g++  v+l  + ++ r+ l++GW++F+  ng + g++++++l++r + ++++++ 
  901025  82 FITLKLTNDGHKKSRVGLPLPFMRANGLNKPG--EIGMLAKDGKKLMVNLLKDVNG-RMSLGRGWRDFALVNGFQIGESITLELIWR-DSNPMFRFS 174
             66777899*********************777..7***************766665.578**************************6.444677765 PP
2B340.83.9e-132463301299
             HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
      B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
             +s++ +lp +f++++g++  +++t+t+  + + +W  +   + ++g++  + GW +F+kang+++g  ++++l+++  +++++++++ +
  901025 246 SSSNKILPSEFMRAYGID--KHMTITILGKANMKWWGYP--SSRDGTIAVGIGWANFCKANGIETGNLFTLELVSEeVDTSPMFRICPN 330
             445579**********99..688************9999..899999***************************8889********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.4E-1378181IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-1578180IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.3E-1782177IPR003340B3 DNA binding domain
PROSITE profilePS5086311.51982179IPR003340B3 DNA binding domain
CDDcd100172.28E-1682173No hitNo description
PfamPF023621.1E-1382174IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-12224321IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.8E-10229331IPR003340B3 DNA binding domain
SuperFamilySSF1019361.14E-12232318IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.502235331IPR003340B3 DNA binding domain
CDDcd100173.53E-8243329No hitNo description
PfamPF023625.6E-12245330IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MMFNVSACGL GELPTPSNNK IGNISRKQHQ RLRTEEGDDQ DKTVVLGRGK RIRKNNSQSE  60
ASSSSSNKSN LNEDVLGDKK SFITLKLTND GHKKSRVGLP LPFMRANGLN KPGEIGMLAK  120
DGKKLMVNLL KDVNGRMSLG RGWRDFALVN GFQIGESITL ELIWRDSNPM FRFSSTGTDS  180
ECDQRQGEYC SQACEEEPIC IEPSGNRDKK EKNNIEDKKY SSLETLNRVL TLTLKPKDVK  240
DCNLVSSSNK ILPSEFMRAY GIDKHMTITI LGKANMKWWG YPSSRDGTIA VGIGWANFCK  300
ANGIETGNLF TLELVSEEVD TSPMFRICPN SGD*
Cis-element ? help Back to Top
SourceLink
PlantRegMap901025
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD7LIB60.0D7LIB6_ARALL; Uncharacterized protein
STRINGscaffold_400526.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142671121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.12e-61B3 family protein