PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

TALE

Protein Properties

Length: 615aa MW: 68018.7 Da PI: 6.9251

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
900861	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.9	9.8e-10	432	469	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe n+yps +++ LA+++gL+ +qV++WF N R + 900861 432 FEHflNPYPSDADKHLLARQTGLSRNQVSNWFINARVR 469 665569******************************88 PP
2	BELL	123.7	7.2e-40	290	361	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+ 900861 290 DRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAVQL 361 589******************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	3.5E-88	220	359	IPR006563	POX domain
Pfam	PF07526	3.9E-52	226	358	IPR006563	POX domain
PROSITE profile	PS50071	12.86	410	473	IPR001356	Homeobox domain
CDD	cd00086	1.21E-12	413	474	No hit	No description
SMART	SM00389	1.1E-9	413	477	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.2E-17	414	480	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-28	416	479	IPR009057	Homeodomain-like
Pfam	PF05920	2.7E-18	430	469	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 615 aa Download sequence Send to blast
MSQDYHHHQG IFSFSNGFHR ASSTTHQEEV DESAVSGAQI PVYETAGMLS EMFAYPGGGG 60 GGSGGEILDQ STKQLLEQQN RHNNSTLHML LPNHHHQQGF AFTDENTMQP QQQQHHFSWP 120 SSSDHHHNRD MIGTVHVEGG KGLSLSLSSS LAAAKAEEYR SIYCAAVDGT SSSSNASAHH 180 HQFNQFKNLL LENSSSHHHH QVVGHFGSSS SSPMAASSST GGIYTLRNSK YTKPAQELLE 240 EFCSVGRGHF KKNKLSRNNS NPNTTGGGGG GGSSSSAGTA NDNPPLSPAD RIEHQRRKVK 300 LLSMLEEVDR RYNHYCEQMQ MVVNSFDQVM GYGAAVPYTT LAQKAMSRHF RCLKDAVAVQ 360 LKRSCELLGD KEAGGAASSG LTKGETPRLR LLEQSLRQQR AFHHMGMMEQ EAWRPQRGLP 420 ERSVNILRAW LFEHFLNPYP SDADKHLLAR QTGLSRNQVS NWFINARVRL WKPMVEEMYQ 480 QEAKEREEEA EENENQQQRR QQQTNNNDTK PNNNENNFTV ITAQTPTTMT STHHENDSSF 540 LSSVAAASHG GSDAFTVATC QQDVSDFHVD GDGVNVIRFG TKQTGDVSLT LGLRHSGNIP 600 DKNTSFSVRD FGDF*

Sequence ? help Back to Top

Protein Sequence Length: 615 aa Download sequence Send to blast

MSQDYHHHQG IFSFSNGFHR ASSTTHQEEV DESAVSGAQI PVYETAGMLS EMFAYPGGGG  60
GGSGGEILDQ STKQLLEQQN RHNNSTLHML LPNHHHQQGF AFTDENTMQP QQQQHHFSWP  120
SSSDHHHNRD MIGTVHVEGG KGLSLSLSSS LAAAKAEEYR SIYCAAVDGT SSSSNASAHH  180
HQFNQFKNLL LENSSSHHHH QVVGHFGSSS SSPMAASSST GGIYTLRNSK YTKPAQELLE  240
EFCSVGRGHF KKNKLSRNNS NPNTTGGGGG GGSSSSAGTA NDNPPLSPAD RIEHQRRKVK  300
LLSMLEEVDR RYNHYCEQMQ MVVNSFDQVM GYGAAVPYTT LAQKAMSRHF RCLKDAVAVQ  360
LKRSCELLGD KEAGGAASSG LTKGETPRLR LLEQSLRQQR AFHHMGMMEQ EAWRPQRGLP  420
ERSVNILRAW LFEHFLNPYP SDADKHLLAR QTGLSRNQVS NWFINARVRL WKPMVEEMYQ  480
QEAKEREEEA EENENQQQRR QQQTNNNDTK PNNNENNFTV ITAQTPTTMT STHHENDSSF  540
LSSVAAASHG GSDAFTVATC QQDVSDFHVD GDGVNVIRFG TKQTGDVSLT LGLRHSGNIP  600
DKNTSFSVRD FGDF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrm_A	1e-15	419	477	5	63	Homeobox protein Meis2
4xrm_B	1e-15	419	477	5	63	Homeobox protein Meis2
4xrs_A	7e-16	419	476	1	58	Homeobox protein Meis1
4xrs_B	7e-16	419	476	1	58	Homeobox protein Meis1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269\|PubMed:17873098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	900861

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF353092	0.0	AF353092.1 Arabidopsis thaliana BEL1-like homeobox 4 (BLH4) mRNA, complete cds.
GenBank	AY058179	0.0	AY058179.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds.
GenBank	AY142019	0.0	AY142019.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002880524.2	0.0	BEL1-like homeodomain protein 4
Refseq	XP_020884159.1	0.0	BEL1-like homeodomain protein 4
Swissprot	Q94KL5	0.0	BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBL	D7LG22	0.0	D7LG22_ARALL; Uncharacterized protein
STRING	scaffold_400362.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2166	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	0.0	BEL1-like homeodomain 4

Link Out ? help Back to Top
Phytozome	900861
Entrez Gene	9316591

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]