PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

900851

Common Name

ARALYDRAFT_900851

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 312aa MW: 34834.2 Da PI: 4.3847

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
900851	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.8	3.9e-43	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrrkC+++Cv+apyfp ++p+kf +vh++FGasnv+k+l++lp+++red+++sl+yeAear+rdP+yG+vg+i+ lqq l++ +++l+++kee 900851 5 PCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQREDTVNSLFYEAEARIRDPIYGCVGLISFLQQYLKKIQQDLVTAKEE 104 7**********************************************************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	1.9E-119	2	309	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	27.248	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-41	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MASTPCAACK LLRRKCTQEC VFAPYFPPTN PQKFIFVHRV FGASNVTKIL NDLPPDQRED 60 TVNSLFYEAE ARIRDPIYGC VGLISFLQQY LKKIQQDLVT AKEELAGYMG PDAVIPPPYL 120 PALGNNPPPN FMMSMEGMPP GVIPQGEPLM IREPNLSQQH HQHQPQDEQL QFIASDAQRM 180 AAMMLDRGDQ QGMFNGYGID NNGSVTATGF NQMDVNDHGA SGWLSGPSLA LGSFGDAFQM 240 GQETEHGHIN HDQLQTQLML QPPLQEGQEQ TEEGQFLMQP MGQENLHEEE EEEELEPPIK 300 WRKSESKEAS Y*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-46	2	108	8	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-46	2	108	8	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	900851

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473835	0.0	AB473835.1 Arabidopsis thaliana ASL2 mRNA for ASYMMETRIC LEAVES2-like 2 protein, complete cds.
GenBank	AC003040	0.0	AC003040.3 Arabidopsis thaliana chromosome 2 clone F26B6 map CIC06C07, complete sequence.
GenBank	AC004482	0.0	AC004482.3 Arabidopsis thaliana chromosome 2 clone F27L4 map CIC06C07, complete sequence.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002880519.1	0.0	LOB domain-containing protein 10
Refseq	XP_020883060.1	0.0	LOB domain-containing protein 10
Swissprot	O64836	0.0	LBD10_ARATH; LOB domain-containing protein 10
TrEMBL	D7LG10	0.0	D7LG10_ARALL; LOB domain family protein
STRING	scaffold_400352.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14908	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23660.2	1e-172	LOB domain-containing protein 10

Link Out ? help Back to Top
Phytozome	900851
Entrez Gene	9314760

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]