PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 900536
Common NameARALYDRAFT_900536
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 637aa    MW: 70125.8 Da    PI: 8.4585
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
900536genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.65.6e-08457510558
             CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
             k+  r+  NR AA r+ ++  + i  Le++vk Le+ N +L  ++  ++ke   
  900536 457 KKFQRRLANRAAAARFKEKQTMHILDLERRVKILEKTNASLVGTMTLMEKENMM 510
             67789999*********************************9999988888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.1E-13453517IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-9453511No hitNo description
PROSITE profilePS502179.22455507IPR004827Basic-leucine zipper domain
PfamPF077161.5E-8455507IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.06E-8457512No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MNGRGNRTPS STQYQQNPFS TNGGQSTGMS LSHQTSPSTL SQVPPLIRFP AGSPDFSPGP  60
RCTTQPFPTY SDFTQTSPSF HFHNPFAPGS STLSSSFSNY PLTSPSPSEF HNPLAPTSFT  120
PFPTSSDFTQ TSPSSSTFHN SQGPTISTPS SSFYFPQTSP SPSPVSSSTP FSHDSFMHSN  180
PEPWTIPQPS HVFSSTSSGS STPPSFRRDS FPRSYPGKGS MTHRPILSVL PPSPVYCSNP  240
MVSSSPTSIG RKSIPLMHPS PSVHVANRDS SIRSNQNLHP LPPRVPVKRS NSAKVSRSNT  300
LHSRKSHKRT NSMAPQSSPG SSYLELSDML VGDSSCGEEG FGELIYDEEA MKEFCSEYMI  360
LHNNNNGDQN QNVDVLMITN TADSGGPGNA NESKFKTGST TSGVKRRAGK EIEPSRQLYR  420
SASADTCYSD SIKRRNLQGQ VSSSVGRGDK EAADDPKKFQ RRLANRAAAA RFKEKQTMHI  480
LDLERRVKIL EKTNASLVGT MTLMEKENMM MMGENKEGKL RVQLLEQKAH LLDEIERLEK  540
EAKEREGVDY SQLKLSEELI AEVNRLKVAA GEGMTNPSQF DSPMMQPLDP NMFQLQLNIN  600
EFNQRPLDTN MFQQQVNINE VNEFNQQQPK QDFSGH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1455461PKKFQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap900536
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880367.10.0uncharacterized protein LOC9316434
RefseqXP_020884099.10.0uncharacterized protein LOC9316434
TrEMBLD7LL160.0D7LL16_ARALL; Uncharacterized protein
STRINGscaffold_400037.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2100622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.36e-17bZIP family protein