PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 900280 | ||||||||
Common Name | ARALYDRAFT_900280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 69aa MW: 7697.06 Da PI: 10.0728 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.4 | 1.7e-10 | 2 | 61 | 37 | 90 |
EEEETTS-EEEEEE..EEETTEEEE-......TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 37 tledesgrsWevkliyrkksgryvlt......kGWkeFvkangLkegDfvvFkldgrsef 90 +++ ++g sWev ++ +k+ + ++l+ +GW+ vk+ L +gD++ F++++ +e 900280 2 KIRAQWGSSWEVAISGKKSWNVVYLGrfgafsSGWRCVVKEYPLVVGDTCKFTFIKPDEL 61 678899********555555558888999999*********************9985444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02362 | 5.3E-8 | 1 | 64 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.066 | 1 | 68 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.8E-8 | 2 | 65 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-9 | 16 | 65 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 69 aa Download sequence Send to blast |
MKIRAQWGSS WEVAISGKKS WNVVYLGRFG AFSSGWRCVV KEYPLVVGDT CKFTFIKPDE 60 LLLVVSKP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 900280 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007134 | 4e-60 | AC007134.10 Arabidopsis thaliana chromosome 2 clone F7H1 map mi398, complete sequence. | |||
GenBank | AY247810 | 4e-60 | AY247810.1 Arabidopsis thaliana hypothetical protein (At2g16210/F7H1.23) mRNA, complete cds; alternatively spliced. | |||
GenBank | AY247811 | 4e-60 | AY247811.1 Arabidopsis thaliana hypothetical protein (At2g16210/F7H1.23) mRNA, complete cds; alternatively spliced. | |||
GenBank | AY924741 | 4e-60 | AY924741.1 Arabidopsis thaliana hypothetical protein (At2g16210) mRNA, complete cds. | |||
GenBank | CP002685 | 4e-60 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_179217.2 | 9e-26 | Transcriptional factor B3 family protein | ||||
Swissprot | Q5BPT7 | 8e-27 | Y2621_ARATH; B3 domain-containing protein At2g16210 | ||||
TrEMBL | D7L141 | 6e-42 | D7L141_ARALL; Uncharacterized protein | ||||
STRING | scaffold_304250.1 | 1e-42 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16210.1 | 3e-29 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 900280 |
Entrez Gene | 9322274 |
Publications ? help Back to Top | |||
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