PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 900237
Common NameARALYDRAFT_900237
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 118aa    MW: 13395.3 Da    PI: 5.196
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
900237genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.72.8e-1022113394
             EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
      B3   3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
             k+lt  dv++ +r+++pk  +e+  g +   ++++++ed  +   ++v++  r++ ++y+l++GW    +a+gL+  D++ ++ d+  +++l +
  900237  22 KTLTDFDVSNMARVIIPKIELEAEmGDDLIIGMDVSVEDvNREHPYSVTI-KRGGNDSYYLGNGWTVIKNAKGLNKDDVIGLSWDK-WNRKLDF 113
             889999***************98885555599*******66678899999.4666667*********************9999653.3444455 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.73E-1114110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-1216109IPR015300DNA-binding pseudobarrel domain
CDDcd100175.75E-1222117No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MAQQYLKLEL GLGQPDPWNV RKTLTDFDVS NMARVIIPKI ELEAEMGDDL IIGMDVSVED  60
VNREHPYSVT IKRGGNDSYY LGNGWTVIKN AKGLNKDDVI GLSWDKWNRK LDFKLLR*
Cis-element ? help Back to Top
SourceLink
PlantRegMap900237
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884140.18e-81B3 domain-containing protein At1g10455
TrEMBLD7L0802e-79D7L080_ARALL; Uncharacterized protein
STRINGscaffold_304207.13e-80(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.19e-08B3 family protein