PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 900237 | ||||||||
Common Name | ARALYDRAFT_900237 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 118aa MW: 13395.3 Da PI: 5.196 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.7 | 2.8e-10 | 22 | 113 | 3 | 94 |
EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 k+lt dv++ +r+++pk +e+ g + ++++++ed + ++v++ r++ ++y+l++GW +a+gL+ D++ ++ d+ +++l + 900237 22 KTLTDFDVSNMARVIIPKIELEAEmGDDLIIGMDVSVEDvNREHPYSVTI-KRGGNDSYYLGNGWTVIKNAKGLNKDDVIGLSWDK-WNRKLDF 113 889999***************98885555599*******66678899999.4666667*********************9999653.3444455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.73E-11 | 14 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.9E-12 | 16 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.75E-12 | 22 | 117 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MAQQYLKLEL GLGQPDPWNV RKTLTDFDVS NMARVIIPKI ELEAEMGDDL IIGMDVSVED 60 VNREHPYSVT IKRGGNDSYY LGNGWTVIKN AKGLNKDDVI GLSWDKWNRK LDFKLLR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 900237 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002884140.1 | 8e-81 | B3 domain-containing protein At1g10455 | ||||
TrEMBL | D7L080 | 2e-79 | D7L080_ARALL; Uncharacterized protein | ||||
STRING | scaffold_304207.1 | 3e-80 | (Arabidopsis lyrata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33720.1 | 9e-08 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 900237 |
Entrez Gene | 9322245 |