PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 899900
Common NameARALYDRAFT_899900
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 256aa    MW: 28304.9 Da    PI: 5.6247
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
899900genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57337.66.1e-12931374797
  DUF573  47 fkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
             +  +k+q+ +Kir LK+K+ + +kk      +s++++hd+k++el+k+iWg
  899900  93 SVKNKNQFGDKIRGLKNKYFGSRKK------KSVESDHDNKCLELAKSIWG 137
             45689*******************9......8999***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.0E-891137IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MAKKLLNPLE DPPTASSSDD DEVEISSEED EEQISNSSSK EEDPATIPST KTLKSPSAAA  60
PSPDSGSETD SDSDKPHVFT KKKEATDSPA VKSVKNKNQF GDKIRGLKNK YFGSRKKKSV  120
ESDHDNKCLE LAKSIWGRGV VESPVKSKKK KDESVVKANG KEKKLESLVE EDKELGILRG  180
DSESSNWFDK SFLVRVVASL GVDECIVKWK WSKVTMDTKK RIEEKMKLVE GKEFELLSQK  240
IDVLKEVISV IAETI*
Cis-element ? help Back to Top
SourceLink
PlantRegMap899900
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0428612e-86AY042861.1 Arabidopsis thaliana Unknown protein (T12C22.8) mRNA, complete cds.
GenBankAY0725042e-86AY072504.1 Arabidopsis thaliana unknown protein (At1g44810; T12C22.8) mRNA, complete cds.
GenBankCP0026842e-86CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT12C222e-86AC020576.2 Sequence of BAC T12C22 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020886805.11e-107probable transcription factor At1g44810
SwissprotQ9LPF06e-58STKLB_ARATH; Probable transcription factor At1g44810
TrEMBLD7L6G91e-177D7L6G9_ARALL; Uncharacterized protein
STRINGscaffold_303870.11e-178(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44810.15e-59DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]