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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 899560 | ||||||||
Common Name | ARALYDRAFT_899560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bZIP | ||||||||
Protein Properties | Length: 233aa MW: 25997.6 Da PI: 9.9399 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 24.6 | 5.5e-08 | 154 | 204 | 7 | 57 |
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 rr NR++ s qR +++ Le+k+k Le+eN ++ +++ l++ 899560 154 VRRILANRVSMVLSKQRQSQYVIDLEQKIKFLENENASMSEKITLLENDKT 204 578889****************************************99755 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.2E-7 | 148 | 212 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 4.8E-6 | 149 | 201 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 7.3E-8 | 153 | 206 | No hit | No description |
CDD | cd14703 | 2.85E-16 | 153 | 204 | No hit | No description |
SuperFamily | SSF57959 | 3.66E-8 | 153 | 207 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MNGSNNITPS GPRLMTQPSP ALSLPPLSRP SSSSFRRNSL PSMILSPSAH VESRDSSIRD 60 KKNPSLPPLD VKRRAEKDIE PLRRHNRSVS MDSFFNDLLK LTLSQGNVSS SSLVDGDKNA 120 SGLEFGSSDY TDDELNMIAE STKLKKIASD PVKVRRILAN RVSMVLSKQR QSQYVIDLEQ 180 KIKFLENENA SMSEKITLLE NDKTMMMNEK KEITIKIESL EQQVQLRDGT SF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 899560 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020887778.1 | 1e-111 | probable transcription factor PosF21 | ||||
TrEMBL | D7L015 | 1e-164 | D7L015_ARALL; Uncharacterized protein | ||||
STRING | scaffold_303530.1 | 1e-165 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19327 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G12940.1 | 8e-82 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | 899560 |
Entrez Gene | 9321934 |