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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
897360 |
Common Name | ARALYDRAFT_897360 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
B3 |
Protein Properties |
Length: 264aa MW: 29705.9 Da PI: 7.2724 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
897360 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 101.2 | 5.7e-32 | 29 | 138 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91
f+k ltpsdv+k++rlv+pk++ae++ +e+++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v F+++ r + +
897360 29 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnnnggdddVATTEKGMLLSFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVFFQRH-RfDLHR 130
99***************************999988875566799**************************************************65.447888 PP
.EEEEE-S CS
B3 92 lvvkvfrk 99
l+++++r+
897360 131 LFIGWRRR 138
89999986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0080113 | Biological Process | regulation of seed growth |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 264 aa
Download sequence Send
to blast |
MSVNHYHNTL SLHQHHQNDV AISQRESLFE KSLTPSDVGK LNRLVIPKQH AEKYFPLNNN 60 GGDDDVATTE KGMLLSFEDE SGKCWKFRYS YWNSSQSYVL TKGWSRYVKD KHLDAGDVVF 120 FQRHRFDLHR LFIGWRRRGE ASSSPAVSAV SQEALVNTTA YWSGMTTPYR QVHASTTYPN 180 IHQEYSHYGA VADQAQSIPP VVAGSSRTVR LFGVNLECHG DAVEPPPRPD GYNGQHIYYY 240 STPHPMNISF AGEALEQVGD GRG*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 2e-49 | 22 | 138 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-49 | 22 | 138 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AJ441076 | 0.0 | AJ441076.1 Arabidopsis thaliana mRNA for putative auxin response factor 32 (arf32 gene). |
GenBank | AK175281 | 0.0 | AK175281.1 Arabidopsis thaliana mRNA for putative DNA binding protein, complete cds, clone: RAFL21-71-N13. |