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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 897073 | ||||||||
Common Name | ARALYDRAFT_897073 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 387aa MW: 42090.6 Da PI: 5.5054 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.3 | 7.3e-18 | 52 | 97 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++vk++G ++W++Iar ++ gR++k+c++rw + 897073 52 KGPWSPEEDGVLSELVKKFGARNWSLIARSIP-GRSGKSCRLRWCNQ 97 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 53.3 | 6.3e-17 | 104 | 148 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+ Ed+ ++ a++ +G++ W++Ia+ ++ gRt++ +k++w++ 897073 104 RNSFTEVEDQAIIAAHATHGNK-WAAIAKLLP-GRTDNAIKNHWNST 148 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.061 | 47 | 102 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.74E-30 | 50 | 145 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-14 | 51 | 100 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-16 | 52 | 97 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 53 | 105 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.26E-14 | 54 | 96 | No hit | No description |
SMART | SM00717 | 9.5E-16 | 103 | 151 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.662 | 103 | 153 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.9E-15 | 104 | 148 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.56E-12 | 106 | 149 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-23 | 106 | 152 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MDAEIVRRSE TTGVRREVEE SAEVSGDRGD CADDGGDVGE GTSGRGGRER VKGPWSPEED 60 GVLSELVKKF GARNWSLIAR SIPGRSGKSC RLRWCNQLNP NLIRNSFTEV EDQAIIAAHA 120 THGNKWAAIA KLLPGRTDNA IKNHWNSTLR RRFMDFEKAK NTGTGSLVME DSGFNRTTTI 180 ASSEETLSSG GGGHVTTPIV SSEGKEATSM EMSEEQCVEK SNEEGISRQD GNDPPTLFRP 240 VARLSSFNAY NHMEGLSSPH IQDQNQLQSS KQDTAMLRLL EGAYSERFVP QTCGGGCCSN 300 NPVQQDSLLG PEFVDYLDPP TFPSCELAAI VTDISSLAWL RSGLESSSVR VMEEAAGRLR 360 PQGSRGHRDH YLVSQRGKNI TNVLST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-40 | 51 | 152 | 6 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00337 | DAP | Transfer from AT3G09230 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 897073 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY550295 | 0.0 | AY550295.1 Arabidopsis thaliana MYB transcription factor (At3g09230) mRNA, complete cds. | |||
GenBank | BT026429 | 0.0 | BT026429.1 Arabidopsis thaliana At3g09230 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002882609.1 | 0.0 | transcription factor MYB1 | ||||
Swissprot | Q42575 | 0.0 | MYB1_ARATH; Transcription factor MYB1 | ||||
TrEMBL | D7L7T0 | 0.0 | D7L7T0_ARALL; ATMYB1 | ||||
STRING | scaffold_301043.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8492 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09230.1 | 0.0 | myb domain protein 1 |
Link Out ? help Back to Top | |
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Phytozome | 897073 |
Entrez Gene | 9320789 |
Publications ? help Back to Top | |||
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