PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 896042
Common NameARALYDRAFT_896042
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 163aa    MW: 18935.3 Da    PI: 9.5508
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
896042genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.91.6e-3182140159
             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
             ldDgy+WrKYGqK vk+++fprsYY+Ct +gC+vkk+v+r   d+ vv++tY+g H+h+
  896042  82 LDDGYRWRKYGQKAVKNNPFPRSYYKCTEEGCRVKKQVQRLWGDEGVVVTTYQGVHTHP 140
             59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-3367140IPR003657WRKY domain
SuperFamilySSF1182908.37E-2974141IPR003657WRKY domain
PROSITE profilePS5081130.12577142IPR003657WRKY domain
SMARTSM007744.2E-3782141IPR003657WRKY domain
PfamPF031062.1E-2583140IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006817Biological Processphosphate ion transport
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MEDRRCQVLF PCSSSVDPRL TEYHGVDNSA ECADQLTTSS LSQQNMNTNE EEKPKSKKKK  60
KKKKKEREAR YAFQTRSQVD ILDDGYRWRK YGQKAVKNNP FPRSYYKCTE EGCRVKKQVQ  120
RLWGDEGVVV TTYQGVHTHP VDKPSDNFNH ILTQMHIFPP FS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2772139774Probable WRKY transcription factor 4
2lex_A1e-2772139774Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15664KKKKKKKKK
25864KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00325DAPTransfer from AT3G01970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap896042
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4262511e-136AF426251.1 Arabidopsis thaliana WRKY transcription factor 45 (WRKY45) mRNA, complete cds.
GenBankAK1184571e-136AK118457.1 Arabidopsis thaliana At3g01970 mRNA for putative WRKY-like transcriptional regulator protein, complete cds, clone: RAFL19-70-A15.
GenBankAY0852461e-136AY085246.1 Arabidopsis thaliana clone 1415 mRNA, complete sequence.
GenBankBT0246841e-136BT024684.1 Arabidopsis thaliana At3g01970 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002882154.11e-121probable WRKY transcription factor 45
SwissprotQ9S7638e-84WRK45_ARATH; Probable WRKY transcription factor 45
TrEMBLD7L9J21e-119D7L9J2_ARALL; Uncharacterized protein
STRINGscaffold_300012.11e-120(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01970.17e-85WRKY DNA-binding protein 45
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chen L,Xiang S,Chen Y,Li D,Yu D
    Arabidopsis WRKY45 Interacts with the DELLA Protein RGL1 to Positively Regulate Age-Triggered Leaf Senescence.
    Mol Plant, 2017. 10(9): p. 1174-1189
    [PMID:28735023]