PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 895570
Common NameARALYDRAFT_895570
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 577aa    MW: 65869.2 Da    PI: 7.0154
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
895570genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.55e-3041125187
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
               rW++ e+laL+++r+em++++r++ lk+plWee+s+km+e g++rs+k+Ckek+en+ k++k++keg+ ++++++  t+++f++lea
    895570  41 RWPRPETLALLRIRSEMDKAFRDSTLKAPLWEEISRKMMELGYKRSSKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYRFFEELEA 125
               8********************************************************************975544..6******985 PP
2trihelix107.77.5e-34397482187
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
               rW+k ev aLi++r+++e +++++  k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr + +s+tcpyf+qlea
    895570 397 RWPKTEVEALIRIRKNLEANYQENGTKGPLWEEISAGMKRLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PLDSKTCPYFHQLEA 482
               8*********************************************************************8.9************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.08638100IPR001005SANT/Myb domain
PfamPF138375.1E-2040125No hitNo description
PROSITE profilePS500907.0734098IPR017877Myb-like domain
CDDcd122035.59E-2440105No hitNo description
PROSITE profilePS500907.526390454IPR017877Myb-like domain
SMARTSM007170.0012394456IPR001005SANT/Myb domain
PfamPF138379.0E-24396483No hitNo description
CDDcd122032.13E-25396461No hitNo description
Gene3DG3DSA:1.10.10.601.9E-4396453IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MSGNSSGLLE SSGGGVGGSG EEERDMKLEE TGEGAGGGGN RWPRPETLAL LRIRSEMDKA  60
FRDSTLKAPL WEEISRKMME LGYKRSSKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF  120
EELEAFETLS SYQPEPESQP AKSSAAVTTA PATTSLIPWI SSSNPSIEKI SSPLKHHHQV  180
SSQPITTNPT FLAKQPSSTT PFPFYSNNNT TTVSQPPISN DLMNNVSSLN LFSSSTSSST  240
ASDEEEDHHQ GKRSRKKRKY WKGLFTKLTK ELMEKQEKMQ KRFLETLENR EKERITREEA  300
WRVQEIARIN REHEILIHER SNAAAKDAAI ISFLNKISGG QPQQPQQHNH KPSQRKQYRS  360
DHSITFESKE PRPVLLDTTM KMGNYDNNHS VSPSSSRWPK TEVEALIRIR KNLEANYQEN  420
GTKGPLWEEI SAGMKRLGYN RSAKRCKEKW ENINKYFKKV KESNKKRPLD SKTCPYFHQL  480
EALYNERNKS GTMPLPLPLM VTPQRQLLLS QETQTESETD QRDKVGDKED EEEEGESEED  540
EYDEEEEGEG DNETSEFEIV LNKTSSPMDI NNNLFT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18391KRSSKKCKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap895570
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0871170.0AY087117.1 Arabidopsis thaliana clone 3190 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889107.10.0trihelix transcription factor GT-2
SwissprotQ391170.0TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLD7KTY00.0D7KTY0_ARALL; Uncharacterized protein
STRINGscaffold_202644.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59952847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.20.0Trihelix family protein